Limnochorda pilosa: LIP_2563
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Entry
LIP_2563 CDS
T04150
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpil
Limnochorda pilosa
Pathway
lpil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIP_2563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpil03019
]
LIP_2563
Messenger RNA biogenesis [BR:
lpil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LIP_2563
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAS28393
UniProt:
A0A0K2SMN7
LinkDB
All DBs
Position
complement(2711282..2712946)
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AA seq
554 aa
AA seq
DB search
MAQAPKVSVIPLGGLGEIGKNMTVIENQGEILVIDAGVMFPEDEMPGVDLVIPDISYLVE
RKDRVRAIVLTHGHEDHIGALPYVLRQLPVPVYGTRLTLGLVESKLEEHHLLGETRLREV
QAGESRTIGRFEVEFIHVNHSIADDVALAIHTGAGTILYVTDFKFDQTPIDGRVTDLQKL
AELGRKGVLLLMADSTNAERPGYTLSERVVGQTLMEVFAGAPGRILVATFASNIHRIQQV
VDAADRYGRRLAVVGRSMVNVVGIASRLGYLSVPDGMQVPVEEIGRYKPQELVILSTGSQ
GEPMSALSRMAAQEHRNVAILPGDTVIISANPIPGNERVVGKVINRLLHLGAEVIHSPFS
GIHASGHASQEELKLLLNLVRPRFFVPIHGEYRMLVAHKRLALAVGIPEGHVELAEIGDR
LELTPDSLRKTERVPSGQVLVDGLGVGDVGHVVLRDRRLLSQDGILVVVVTVDKRTGQLV
AGPEVVSRGFVYMRESEALMEDARLQVRRALERRVPDGLSDWQSIKSEVKEILSRYLFER
TRRRPMVLPIVVEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggctcaggcaccgaaggtctccgtcatccctctgggtgggctgggcgagatcggcaag
aacatgacggtgatcgaaaaccagggcgagatcctggtgatcgacgccggggtcatgttc
cccgaggacgagatgccgggcgtggacctggtgatccccgacatcagctacctggtggag
cggaaggaccgggtgcgggccatcgttctcacccacggccacgaggaccacatcggcgcc
ctgccctacgtgttgcgccagctccccgtgcctgtctacggaacgcgcctcaccctgggg
ctggtggagtccaagctggaggagcaccacctcctgggcgagacccggctgcgggaggtg
caggccggggagtcgcgcaccatcggccgcttcgaggtggagttcatccacgtgaaccac
tccatcgccgacgacgtagccctggccatccacacgggtgcgggcaccatcctctacgtg
accgatttcaagttcgaccagacgcccatcgacggccgggtcaccgacctgcagaagctc
gcggagctggggcggaagggcgtgctcctgctcatggccgacagcaccaacgccgagcgg
ccgggctacaccctgtcggaacgggtggtgggccagacgctcatggaggtcttcgccggc
gcgcccgggcggatcctggtggccaccttcgcctccaacatccaccggatccagcaggtg
gtggacgcggccgaccggtacggccgcaggctcgcggtggtggggcgcagcatggtgaac
gtggtggggatcgcctcccggctgggctacctgtcggtgcccgacggcatgcaggtgccc
gtggaggagatcggccgctacaagccccaggagctggtgatcctcagcaccggctcccag
ggcgagcccatgtcggccctgagccgcatggcggcccaggagcaccggaacgtggcgatc
cttccgggcgacacggtgatcatctcggccaaccccatcccgggcaacgagcgggtggtg
gggaaggtgatcaaccgcctgctccacctgggcgccgaggtgatccacagccccttctcg
gggatccacgcctcgggccatgcctcccaggaagagctgaagctcctgctgaacctggtg
cggccgcgcttcttcgtgcccatccacggcgagtaccggatgctggtggcccacaagcgg
ctcgcgctggcggtgggcatccccgagggacacgtcgagctggccgagatcggcgaccgc
ctggagctgacccccgattcgctgcgcaagaccgaacgggtcccctcagggcaggtgctg
gtggacggcctcggggtgggcgacgtggggcacgtggtcctgcgcgaccggcggctcctc
tcccaggacgggatcctggtggtggtggtcacggtggacaagcgtacgggccagctggtg
gcggggcccgaggtggtctcccggggcttcgtctacatgcgtgagtccgaggcgctcatg
gaagacgcccgcctccaggtgcgccgggccctggaacgccgggtgcccgacgggctctcg
gactggcagtcgatcaagtccgaggtgaaggagatcctttcacgctacctcttcgagcgg
acccgccgccgccccatggtgcttcccatcgtggtggaagtctga
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