KEGG   Limnochorda pilosa: LIP_2931
Entry
LIP_2931          CDS       T04150                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
lpil  Limnochorda pilosa
Pathway
lpil03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lpil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LIP_2931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lpil03400]
    LIP_2931
DNA repair and recombination proteins [BR:lpil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LIP_2931
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LIP_2931
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR AAA_30 DEAD AAA_16 P-loop_SecA AAA_19 Kinesin AAA_5 PepSY AAA_22 Microtub_bd SWI2_SNF2 DUF87
Other DBs
NCBI-ProteinID: BAS28760
UniProt: A0A0K2SNS2
LinkDB
Position
complement(3098152..3100185)
AA seq 677 aa
MTGETKPFRVVSDFEPAGDQPKAIAQLVEGLTAGERFQTLLGVTGSGKTYTMAKVIEAVQ
RPTLVLAHNKTLAAQLTSEFRSFFPDNAVHYFVSYYDYYQPEAYVPQSDTYIEKDASIND
EIDRLRHAATSALFERRDVVIVASVSCIYGLGSPEDYVGMTLSLRHGDFRDRDLILRKLV
GIQYERNDIGFKRGTFRVRGDVIEIIPAYHENVLRIEFFGDEVDRILEVDPVTGEILGER
ETLVIYPASHYVTPEEKMKKAVVAIEQELEERLAYLRGEGKLLEAERLEQRTRYDLEMLR
EVGYCNGIENYSRHLAGRRPGEPPACLLDYFPGDFLMFIDESHQTVPQVGGMYHGDMSRK
QTLVEYGFRLPSALDNRPLRFEEFERHYNQVIFVSATPGPYERRMSSRTVEQIIRPTGLV
DPEVVVRPVKGQIDDLIHEIRGVTERGERVLVTTLTKKMSEDLTDYLQEMSIRVRYLHSE
IAALERIEILRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTI
GRAARNVNGRVILYADQVTDSMRAALDETRRRRELQLEYNREHGIAPETIRKKIRDIVQD
ARAQEAAQEAEKAERVRRRAQAMRPEELARQIQELEEQMYDAAKQLEFERAAELRDEVKE
LRDVLTGLGQMRAAAFS
NT seq 2034 nt   +upstreamnt  +downstreamnt
gtgacgggggagaccaagccctttcgcgtggtctccgacttcgagcccgcgggcgaccag
cccaaggccatcgcccagctcgtggagggtctgacggctggcgagcggttccagacgctc
ctgggcgtcaccgggtccggcaagacctacaccatggccaaggtgatcgaggctgtccag
cggcccaccctggtgctggcccacaacaagacgctcgcggcccagctcacctccgagttc
cggagcttcttccccgacaacgccgtccactacttcgtgagctactacgactactaccag
cccgaggcgtacgtgccccagagcgacacctacatcgaaaaggacgcctcgatcaacgac
gagatcgaccgcctccgccacgcggccaccagcgccctcttcgagcggcgggacgtggtc
atcgtcgcgagcgtctcgtgcatctacggcctgggctcccccgaggactacgtggggatg
accctctccctgcgccacggcgacttccgcgaccgcgacctgatcctccgcaagctggtg
gggatccagtacgagcggaacgacatcggcttcaagcggggcaccttccgggtgcggggc
gacgtgatcgagatcatccccgcctaccacgagaacgtgctgcgcatcgaattcttcggg
gacgaggtggaccggatcctggaggtggacccggtcaccggcgagatcctgggcgagagg
gagaccctggtgatctacccggccagccactacgtgacgcccgaggaaaagatgaagaag
gccgtggtggccatcgagcaggagctggaggagcgtctggcttacctgcgcggggagggg
aagctgctggaggccgagcggctcgagcagcggacccgctacgacctggagatgctccgg
gaggtcgggtactgcaacggcatcgagaactactcccggcacctggcgggccgccggccg
ggtgagccgcccgcctgcctcctggactactttcccggcgacttcctcatgttcatcgac
gagtcgcaccagaccgtcccccaggtgggcggcatgtaccacggcgacatgtcccgcaag
cagaccctggtggagtacggcttccggctaccctcggccctggacaaccgaccgctccgc
ttcgaggagttcgagcgtcactacaaccaggtgatcttcgtctcggccaccccgggcccc
tacgagcggcggatgtcgagccggaccgtggagcagatcatccggcccacgggtctggtg
gacccggaggtggtggtccgccccgtgaagggccagatcgacgacctgatccatgagatc
cgcggggtgaccgagcggggcgagcgggtgctggtgacgaccctcaccaagaagatgtcc
gaggacctcaccgactacctccaggagatgtccatccgggtccgctacctccactcggag
atcgccgccctggagcggatcgagatcctgcgggacctgcggctgggcaagttcgacgtg
ctggtgggcatcaacctcctgcgggagggcctcgacctgcccgaggtctcgctggtggcc
atcctggatgccgacaaggaaggcttcctccgctcggagacgtcgctcatccagactatc
gggcgggccgcccggaacgtcaacggccgcgtgatcctctacgccgaccaggtgaccgac
tcgatgcgggccgccctcgacgagacccgccggcgccgggagctgcagctcgagtacaac
cgggagcacgggatcgcgccggagaccatccggaagaagatccgcgacatcgtccaggac
gcccgggcccaggaggccgcgcaggaggcggagaaggccgaacgggtgcgacggcgggcc
caggccatgcgccccgaggagctggcccgccagatccaggagctggaggaacagatgtac
gacgcggcgaaacagctggagttcgagcgggccgcggagctgcgggacgaggtgaaggag
ctccgggacgtcctcacggggctcgggcagatgcgggcggcggcattcagctag

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