Limnochorda pilosa: LIP_2975
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Entry
LIP_2975 CDS
T04150
Name
(GenBank) helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lpil
Limnochorda pilosa
Pathway
lpil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LIP_2975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpil03400
]
LIP_2975
Enzymes [BR:
lpil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LIP_2975
DNA repair and recombination proteins [BR:
lpil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LIP_2975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
NUDIX
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
NUDIX_4
Viral_helicase1
DNA_pol_lambd_f
AAA_22
HHH_2
HHH
AAA_11
AAA
nSTAND3
AAA_28
NAT10_TcmA_helicase
UvrD-helicase
NTPase_1
NPHP3_N
AAA_16
AAA_25
T2SSE
SLFN-g3_helicase
PhoH
AAA_5
NACHT
TsaE
AAA_18
Zeta_toxin
Nudt16-like
nSTAND_NTPase5
SH3_12
bpMoxR
PIF1
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
BAS28804
UniProt:
A0A0K2SPQ4
LinkDB
All DBs
Position
complement(3144140..3147061)
Genome browser
AA seq
973 aa
AA seq
DB search
MNPSGDQRPDRIDGRVARVTFRNPENGFTVLRLEQEGGGRVAVVGNLPELKDGQPVRLFG
RWTQHPRYGQQFEADAVEVVEPTGAEAIERYLASGAIPGVGPVLARRLVERFGARTLEVI
EEAPRRLTEVEGVGREKARRIHRGLKDQKDAREAFLFLQGHGVGPALAARIHQTYGERTV
ARIQEDPYRLIYDVRGVGFLTADRIARSLGIPVDGPQRARALIRHRLQEATLAGHTFLPR
PDLQREVVQEGIPPERFEEALAAAAERDEVVQEPGEVDAVYLPYLYEAELEVCLRLRLLL
SSPSPEGEREPAMASGREQDGEPGPEAPRRGAQRVDPARLSQEVALAERSSRLELAPEQR
EALVQALVQPVLIITGGPGTGKTTLARAVAAWCQARQVRLLLASPTGRASRRLREATGLP
ARTLHRTLEFTYVPGAGERAGARWVRNAGNPLDADVVLVDELSMVDLPLFARLLAAVRPP
TRLILIGDADQLPSVGPGQVLRDLLESGVVPSFRLRQIFRQAEQSLIVQNAHRIRTGRRP
VWNRPGGEFFFIPAEPEAIPALVTDLVSRRLPSFAPDLTPAQIQVLCATRRGPSGADGLN
RSLQEALNPAHPGKAEVTGGTTPEGEPERFRVGDRVMQVRNDYEKMVFNGELGRVAAVDP
EQEQVTVVFDEGEESQEVLYGPGELDELQLAYATSVHKSQGSEYPAVVMPVVSVMPALMS
RNLLYTAITRARRLVVLVGQVDALERYCRSSGALLARHSRMARRLVDVLGQGSPRIRPVQ
ALRPALEALWRERHLAAPLEALWVDPERQRPSALCYVEREGRYLMIRRTKEPFAGLWTAP
GGKVEPGESPEEAIRREVREETGLELERLELRMITSETGPHPAYNWLLFVFQGTAAPGPE
RDGGEGALRWFDRAELERASLPDVDRRLLPYLLAGPGAPLHLARVRYDAGGGVAELEVEE
AGRTAPAAGETRE
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccatccggcgaccagcggcccgaccggatcgacggtcgggtcgcacgcgtcacc
tttcgcaaccccgagaacggcttcacggtcctgcgcctggagcaggagggcgggggccgg
gtcgccgtggtggggaaccttccggagctgaaggacggccagcccgtgcgcctcttcggt
cgctggacccagcacccccgttacggccagcagttcgaggccgacgcggtggaggtggtg
gagcccacgggcgcggaggccatcgagcggtacctggcctcgggcgccatccccggggtg
gggcccgttctggcgcgccggctggtggagcgcttcggcgcccgcaccctggaggtcatc
gaggaggccccccggcgcctcacggaggtggaaggggtggggcgcgagaaggcgcgccgg
atccaccggggcctgaaggaccagaaggacgcccgggaggccttcctgttcctgcagggt
cacggcgtgggccccgcgctcgcggcccgcatccaccagacctacggggagcgcaccgtc
gcccgcatccaggaagacccctaccggctcatctacgacgtgcggggcgtgggcttcctc
accgcagaccgcatcgcccgcagcctggggatccccgtggacggcccccagcgggccaga
gccctgatccgccaccggctgcaggaggccacccttgccggccacaccttcctcccccgc
ccggacctgcagcgggaggtggtgcaggagggcatcccccccgagcggttcgaggaagcc
ctcgccgccgcggcggaacgggacgaggtggtgcaggagccgggcgaggtggacgcggtc
taccttccttacctgtacgaggcggagctcgaggtgtgcctgcgcctgcgcctgctcctg
tcgagcccgtccccggagggagagcgggagccggcgatggcgtccgggcgggagcaggac
ggcgagccaggcccggaagctccccggcgcggcgcccagcgggtggaccccgcgcggctc
tcccaggaggtggcgctggccgagcggagcagcaggctcgagctggcgcctgagcaacgg
gaggccctggtccaggccctggtccagcctgtgctcatcatcaccggcgggccgggaacg
ggcaagaccaccctcgcccgggcggtggccgcctggtgccaggcgcggcaggtccgcctc
ctgctcgcctcgcccacgggccgggcctcccggcgactgcgggaagcgacgggcctccct
gcccgcaccctccatcggaccctggagttcacgtacgtgcccggcgcaggcgagcgggcg
ggtgcccgctgggtgcgaaacgccgggaaccccctggacgcggacgtggtgctggtggac
gagctctcgatggtggacctgcccctcttcgcccgcctcctggccgccgtccggccgccc
acccgcctgatcctcatcggtgacgcggatcagctcccttccgtgggccccggccaggtg
ctccgggacctgctggagtccggggtggtgccgagcttccgcctccggcagatcttccgc
caggccgagcagagcctcatcgtccagaacgcccaccgcatccggacgggccggcgcccg
gtgtggaaccggccggggggcgagttcttcttcatcccggccgagcccgaggcgatcccc
gcccttgtcaccgatctggtgagccgccgcctcccctccttcgccccggacctcaccccg
gcccagatccaggtgctctgcgccacccgccggggtcccagcggcgccgacggcctcaac
cgctcgctgcaggaggccctcaacccggcccacccggggaaggccgaggtgaccggaggg
accacgcccgagggtgagccggagcggttccgggtgggcgaccgggtgatgcaggtgcgg
aacgactacgagaagatggtcttcaacggcgagttggggagggtggcggccgtggacccg
gagcaggagcaggtgaccgtcgtcttcgacgagggggaggagagccaggaggtactctac
gggcccggcgagctggacgagctgcagctcgcctacgcgacctcggtgcacaagagccag
ggcagcgagtacccggcggtggtcatgccggtggtgtcggtgatgccggcgctcatgagc
cggaacctcctctacaccgccatcacccgggcccggcggctggtggtgctggtggggcag
gtggacgcgctggagcggtactgccgcagcagcggggccctcctcgcacgccacagccgg
atggcacggcgcctggtggacgtcctggggcagggatcgccgaggatccgcccagtgcag
gcgcttcgcccggccctggaggccctctggcgcgagcggcacctggccgcgccgctggag
gcgctctgggtggatccagagcggcagcggcccagcgccctctgctacgtggagcgagag
gggaggtacctcatgatccgccgcaccaaggagcccttcgccggcctctggaccgccccg
ggcggcaaggtggagccgggcgagtcccccgaggaggccatccgccgggaggtgcgggag
gagacgggcctggagctggagcggttggagctgcggatgatcacctccgagaccggtccc
cacccggcctacaactggctgctcttcgtcttccagggaacggccgcgccgggccccgag
cgggacggtggggagggggccctgcgctggttcgatcgggccgagctggaacgcgcctcg
ctgcccgatgtggaccggcgcctgctcccctacctcctggccggacccggcgctcccctg
cacctggcccgggtccggtacgacgccggcggcggggtggcggagctggaagtggaggag
gccggcaggaccgcgcccgcggccggcgaaaccagggagtga
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