Limnochorda pilosa: LIP_3143
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Entry
LIP_3143 CDS
T04150
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lpil
Limnochorda pilosa
Pathway
lpil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIP_3143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpil03021
]
LIP_3143
03019 Messenger RNA biogenesis [BR:
lpil03019
]
LIP_3143
Transcription machinery [BR:
lpil03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LIP_3143
Messenger RNA biogenesis [BR:
lpil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LIP_3143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
AAA_22
NACHT
AAA_25
AAA
S1CSD-TOTE-2
Mor
Motif
Other DBs
NCBI-ProteinID:
BAS28970
UniProt:
A0A0K2SPB7
LinkDB
All DBs
Position
complement(3322159..3323430)
Genome browser
AA seq
423 aa
AA seq
DB search
MNISELQTKTAAELHEVAKELGMNGAAKLRKNELVLAILKKQAEKEGLIFTHGILEVLPD
GYGFLRVNGYEPGAEDVYVSPSQIRRFGLRTGDLVTGQVRKPKEGERYHALLRVVAANMD
DPEKAGRRPEFDKLTPVYPDERLRLEVEGSGDVATRLMDVIAPLGKGQRGMIVSPPKAGK
TTVLKKIANSIAVNHPEVHLMVLLIDERPEEVTDMQRSVDGEVVSSTFDEPPENHVRVAD
LVLERARRLVEQKVDVVILLDSITRFARAHNLVVPPSGRTLSGGVDPAALHRPKRFFGAA
RNIEEGGSLTIIATALIETGSRMDEVIYEEFKGTGNMELHLDRKLAERRIFPAIDIYRSG
TRKEELLLSPEELEMTWILRRVLSSLGTAETTDLIIDRLTHTKNNREFTDMIIHSQFAEN
VRT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatctcggagcttcagaccaagacggccgcggagctgcacgaagtggccaaggaa
ctgggcatgaacggcgcggccaagctgcgcaagaacgagctggtcctcgccatcctcaag
aagcaagccgaaaaggaagggctcatcttcacccatggtatcctggaggtcttgcccgac
gggtacggcttcctgcgggtgaacggctacgagccgggcgccgaggacgtgtacgtgtcg
ccttcgcagatccgccgcttcgggctgcgcacgggcgacctggtgaccggccaggtgcgc
aagcccaaggaaggcgagcggtaccacgcccttctccgggtggtggcggccaacatggac
gatcccgagaaggcggggcgcaggcccgagttcgacaagctcacccctgtctaccccgac
gagcggctccggttggaggtcgagggctcaggcgacgtggccacgcgcctgatggacgtc
atcgcccctctgggcaaggggcagcggggcatgatcgtctcgccccccaaagccggcaag
accacggtcctcaagaagatcgccaacagcatcgccgtcaaccacccggaggtccacctg
atggtgcttctcatcgacgagcgccccgaagaggtgaccgacatgcagcgctcggtggac
ggcgaagtggtcagctccaccttcgacgagccgccggagaaccacgtgcgggtcgccgac
ctggtactggagcgggccaggcgcctggtggagcagaaggtggacgtggtgatcctgctg
gacagcatcacccgcttcgcccgggcgcacaacctggtggtaccgcccagtggccgcacc
ctgtcgggcggcgtggaccccgccgccctgcaccggcccaagcgcttcttcggcgccgcc
cggaacatcgaggagggcggcagcctcaccatcatcgccacggcgctcatcgagacgggc
tcccggatggatgaggtcatctacgaggagttcaagggaaccggcaacatggagctccat
ctggatcggaagctggccgagcgccgcattttcccggccatcgacatctaccgctcgggc
acccggaaggaagagctgctcctctcccccgaggagctggagatgacctggatcctccgc
cgcgtcctcagctccctcgggaccgcggagacgacggacctgatcatcgatcggctcacg
cacaccaagaacaaccgggagttcaccgacatgatcatccactcccagttcgctgagaat
gtccggacgtga
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