Limnochorda pilosa: LIP_3497
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Entry
LIP_3497 CDS
T04150
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lpil
Limnochorda pilosa
Pathway
lpil03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LIP_3497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpil03400
]
LIP_3497
Enzymes [BR:
lpil01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LIP_3497
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LIP_3497
DNA repair and recombination proteins [BR:
lpil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LIP_3497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
BAS29309
UniProt:
A0A0K2SR61
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All DBs
Position
3661404..3662237
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AA seq
277 aa
AA seq
DB search
MPELPELEAVRLFLREVLPGREIVEAQVFRPTVIRCLAGEPFPEAIRGRRFESVGRRGKF
LRFGLSDGLEMVINPMLTGRLQWARRGDRRLQKGFFSLLLDGGHELRYSDAKSMGMVYLL
PAADLEQIPRFADQGPEADDPNLDLEAFRARLRRFHGEVKSILTNHRFLAGIGNAYADEI
LFEAGIYPFRRRPSLTVTEVEALHRALVVVLGRGLARAREAITETGEIHLKPRGFFAVHG
RPGEPCLRCGRPVSAVRTGRIATHFCRTCQPGSLVRN
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctacccgagctggaagcggtccggctgttcctgcgggaggtcctcccgggc
agggagatcgtggaggcgcaggtcttccgccccacggtgatccgctgcctggcgggcgag
cccttcccggaggcgatccgcggccgccgcttcgaatcggtgggacgtcgagggaagttc
ctgcgcttcgggctcagcgacggcctggagatggtcatcaaccccatgctcacgggccgc
ctgcagtgggcgaggcgcggcgaccggcgcctgcagaaaggcttcttctcgctcctcctg
gacggcgggcacgagctccgctactcggacgcgaagagcatgggcatggtctacctcctg
cccgcggccgacctggaacagatcccccgcttcgcggaccagggccccgaggcggacgac
ccgaacctggacctggaagccttccgggcccgcctccgccgcttccacggtgaggtcaag
tcgatcctcaccaaccaccgcttcctggccgggatcggcaacgcctacgcggacgagatc
ctcttcgaggcggggatctaccccttccggcgacggccgagtctgaccgtcaccgaggtg
gaggcgctccatcgggccctggtcgtggtccttgggcgggggctggcccgggcacgggag
gccatcaccgagacgggcgagatccacctgaaacctcgcggcttcttcgcggtccacggg
cggccgggcgagccctgcctccggtgcggccgtcccgtctcggcggtgcggaccgggcgc
atcgccacccatttctgccgcacctgccagcccgggagcctggtgcggaactag
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