Lactiplantibacillus plantarum JDM1: JDM1_0006
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Entry
JDM1_0006 CDS
T00946
Symbol
gyrA
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpj03032
]
JDM1_0006 (gyrA)
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_0006 (gyrA)
Enzymes [BR:
lpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
JDM1_0006 (gyrA)
DNA replication proteins [BR:
lpj03032
]
Prokaryotic type
DNA Topoisomerases
JDM1_0006 (gyrA)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JDM1_0006 (gyrA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
7tm_6
Motif
Other DBs
NCBI-ProteinID:
ACT60895
LinkDB
All DBs
Position
6676..9237
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AA seq
853 aa
AA seq
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MADSDLSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGV
TPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGA
AAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVG
MTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGR
GNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDR
EGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQ
EDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYGLSD
KQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKDRINQIIYEELMEIQRK
FGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTHNGYIKRLPTTEFKSQHRGGRGIQGMD
VHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKGIPVINLLGVNSGEKI
QAVVNVTGDASASDNYLFFTTVKGVVKRTPVQEFANIRSNGLKAITLKDDDELIGVTITD
GHQNIIIGTHDGYAVSFDETTVRSMGRTASGVRGIRLRDDDFVIGFDVLKPDSNVFIITE
KGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHLAGLTTVDGQEDIMVMTNQGVMIRFNI
ATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVDETVATDATTEAPVDDQTVNADAT
TTEPTTDSNDSNE
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
ttggctgattcagatttatcgaacaatcgtatttcggatgtgaacctttcgaagaccatg
cgaacgtcattcttaagctatgccatgagtgttatcgtggcacgggcactgccggacgta
cgtgatgggttaaagccagtgcaccggcggattctttacggtatgagtgaattaggtgtg
acgccggataagccgtataagaagtcggcccggattgttggggatgttatggggaagtat
catccccatggtgactccgcaatttatgagtcaatggtgcggatggcccaagactttagc
tatcgctacatgttagtggatggtcacgggaacttcggttctgtcgatggtgacggggct
gccgcgatgcggtataccgaagcccggatgagtaagattgcggttgaaatgctccgcgat
attaacaaggataccgttgattggcaaccaaactatgatgatacagaacgggaaccagca
gtcttaccagcacgtttcccgaacttactcgttaacggtgccactgggattgctgttggg
atgacaacaaacattccgccacataacttagcggaagtcatttcagcaatccacttgttg
atggataatcctgatgcaacagttgctgacttgatggaagtcttacctggaccagatttt
ccaactggcgggatcgtaatgggaaagtccggtattcgtaaggcttaccagactggtcgt
gggaacattattgttcgtgcgaaggtcgatattcaagaccaaaagaatggtaagcaacga
attatcgtgaccgaattgccatatatggtcaataaagctaaattgatcgaacggattgct
ggtttagctcgagacaaggaaattgaaggtatcactgatatcaatgatgaaagtgaccgt
gaagggatgcggatcgtcattgatgttcggcgggatgccagcgcctcggttatcttgaat
aacctttacaagatgacattgatgcagactaactttggctttaacatgttagccatcgtt
aagggtgctccaaaagtcttaagcttaaagcaaatcttaatctattacctggaacaccag
gaagacgtgattcggcgtcggactgagtttgacttgaagaaagcccaagcacgggcccat
attcttgaaggcttacggattgcccttgatcacattgatgaaatcattgcgattattcgt
caatcacaaacgagtgaaattgcgaagaaccaattgatggataattacggcttgtctgat
aagcaggcacaagccattcttgatatgcggttagtccggttaactggtttggaacgtgaa
aagatcgagagtgaataccaggacttattgaaagccattgctgactacaaagaaatctta
gctagcaaggatcgtatcaaccaaattatttacgaagaattaatggaaattcaacgtaag
tttggtgataagcgtcggaccgaattgatggtcggtgaagtcctcagtattgaagatgaa
gacttgatcgaagaagaagaagtggctgttaccttaactcacaatggctacatcaaacgg
ttaccaacgactgaatttaagtcgcaacaccgtggtggtcgtgggattcaagggatggac
gtccatgatgatgactttattgaacatctactgacgacgtcgacccatgatgtcctactc
tttttcactaatgcgggtaaagtttaccggatgaaggcttacgagattcctgaatacggt
cgtacggccaaaggaatcccggtcatcaatttattgggagtcaattctggtgaaaaaatt
caggcggtcgttaatgtcacgggcgacgcgagcgcttctgataactacctgttctttaca
accgttaaaggggttgtcaaacggacaccagttcaagaatttgccaatatccgaagcaat
ggtttgaaggccattacgcttaaggatgatgatgaattaatcggggttacaatcacggat
ggtcaccaaaatataatcatcgggacgcacgacggttatgctgtcagtttcgacgaaacc
acggtgcggtccatgggccggacggcttctggggttcgcgggattcgcttacgcgatgat
gactttgtgattggctttgacgttttgaagcccgacagcaacgtcttcatcatcacggaa
aagggttatgggaaacaaacgccagctgccgattacccaattaaggggcgtggtggcaaa
ggaattaagaccgctaacgtgactgagaagaatggtcatttagctggtttgacgacggtt
gatggtcaagaagatatcatggtaatgacgaaccaaggagtcatgattcgcttcaatatc
gcaaccgtttctcagactggtcgggcaaccttaggtgttcgtctcatgcggttaggcgat
gatggtcaagtcgcaacgatggccaaggttgatccagagccagaagttgatgagactgtc
gcaacggatgcaacgactgaggcaccagttgacgatcaaaccgtcaacgccgatgccact
acgacagaaccaacaactgattcaaacgattcaaacgaataa
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