Lactiplantibacillus plantarum JDM1: JDM1_0404
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Entry
JDM1_0404 CDS
T00946
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
lpj
Lactiplantibacillus plantarum JDM1
Pathway
lpj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JDM1_0404 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpj03021
]
JDM1_0404 (rpoE)
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_0404 (rpoE)
Transcription machinery [BR:
lpj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JDM1_0404 (rpoE)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JDM1_0404 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
Patatin
Motif
Other DBs
NCBI-ProteinID:
ACT61293
LinkDB
All DBs
Position
426225..426833
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AA seq
202 aa
AA seq
DB search
MELKQFDGQKKSELSLIEVAHAILSQHGDVMAFADLTNAVQSYLGKSDEEIRERLSQFYT
DLNIDGSFISLGDNMWGLRAWYPFESIDEAVIHTDDDEDEDRPKRKKRKKVNAFLADAGD
DDDVIDYDDDDPEDDDNYDDDDDQDDDTDDSASSKYDELAGVDDTDDDVADETLPDGIEG
QLSELNDDDDDDDYDDEDDESK
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
ttggaactaaaacaatttgatggacaaaaaaagtccgaattatctttaatcgaggttgct
cacgcgatcttatcacaacatggtgatgtgatggcttttgccgacttgaccaacgctgtg
caatcatatttaggtaaaagcgacgaagaaattcgggagcgtttatcacaattttatacc
gatcttaatatcgatggtagtttcatttcgctcggtgacaatatgtggggcctgcgtgca
tggtacccatttgaatccattgacgaagccgttattcatacggacgatgacgaagatgag
gatcggccaaagcgcaagaagcgtaagaaggttaacgccttcttggccgatgccggggat
gatgacgacgtgatcgattacgatgacgatgatcccgaagatgacgataactacgatgac
gatgatgatcaggacgacgatactgatgattcagcaagcagcaagtacgatgaacttgcg
ggtgttgatgacacagacgacgatgttgctgatgaaacgttgccagacggtatcgagggt
caattatcagagttaaatgatgacgatgatgatgacgactacgatgacgaagacgacgaa
tcgaaataa
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