Lactiplantibacillus plantarum JDM1: JDM1_0413
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Entry
JDM1_0413 CDS
T00946
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lpj
Lactiplantibacillus plantarum JDM1
Pathway
lpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDM1_0413 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpj03021
]
JDM1_0413 (rho)
03019 Messenger RNA biogenesis [BR:
lpj03019
]
JDM1_0413 (rho)
Transcription machinery [BR:
lpj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JDM1_0413 (rho)
Messenger RNA biogenesis [BR:
lpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JDM1_0413 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
S1CSD-TOTE-2
ATPase_2
AAA
Motif
Other DBs
NCBI-ProteinID:
ACT61302
LinkDB
All DBs
Position
437436..438728
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AA seq
430 aa
AA seq
DB search
MEKILTMHDLEQKTLKEIYNYAREYKISYYSQMNKKELSLAVLREQDKKRGFVQMEGVLE
IISQEGYGFLRPINYGPSQEDIYISQSQIHRFGLRNGDYVAGQARPPRPNERYYGLMRVG
TVNGKDPNEAKQRPHFPALTPLYPQRQIKLSTTAAVLATRLIDTFVPIGFGQRGLIVAPP
KAGKTTLLKNIANGIVANYPDAKLIMLLIDERPEEVTDLERSIKGEVVSSTFDQQPQNHV
RVAELVLERARRLVEDKQDVIILLDSITRLTRAYNLVIPSSGRTLSGGVDPTAFYKPKRF
FGSARNIEEGGSLTILGTALVDTGSRMDDMIYEEFKGTGNSELQLSRELAERRVFPALDL
KQSSTRKEELLVSRKNLEPVWQIRRSMTGNALEYTEQLLQFLKHTKTNTEFVRDLASLKF
TGQSTRRSRR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaattttaacaatgcacgatctcgagcagaaaacgttaaaagaaatttataac
tatgctcgtgagtataaaatttcttattattcgcaaatgaataaaaaggaactctcatta
gccgttctccgtgagcaggataaaaagcggggctttgtacaaatggaaggcgtcttggaa
attattagccaagagggctatggctttttgcggccaattaattatgggccttcgcaggaa
gatatttatatttctcagtcgcagattcatcgctttggtcttcgtaacggagactatgtg
gctggtcaagcccggccaccgcgacctaacgaacggtattacggtttaatgcgggtaggg
acggttaacggtaaggatcctaatgaggccaagcaacggccccattttccagcgttaaca
ccactttatccacaaagacaaattaagttatcgacaacggccgccgttttagcaacccgt
ttgattgatacttttgtcccgattggcttcggtcaacggggcttaattgtcgcacctcct
aaagccggtaagacgacgctgttaaagaatattgcaaatggcatcgtcgccaattatcca
gacgctaagctgattatgttgctgattgatgaacggcccgaagaagtgactgatttagag
cggtcaatcaagggagaagtggtgagttctacttttgatcaacaaccacaaaatcacgtg
cgtgttgcggaattggtgcttgaacgtgcgcggcgcctagttgaagacaaacaggatgtg
attatcttattggattcgattacccggcttacgcgggcatataatttggtcatcccgtct
agcgggcggacgttgtctggtggggtcgatcccacggcgttttacaagcccaagcgattc
ttcggttccgcgcgcaatatcgaggaaggtggtagcctaacgattttaggcaccgcgtta
gtcgatacgggtagccggatggacgacatgatttatgaagaattcaaaggaactggcaac
tcagaattgcagctatcccgcgagttagctgagcggcgggtcttcccggcgctagacttg
aagcaatccagtacgcgtaaagaggaattgttggttagtcgtaagaatttggagccagtc
tggcagattcggcgatcaatgactggcaacgcgttagagtataccgaacagcttttacaa
tttttaaaacacacgaagaccaacactgagtttgttcgtgatttagctagcttaaagttc
actggtcaatcaacccggcggtcgcgtcgttaa
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