Lactiplantibacillus plantarum JDM1: JDM1_0798
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Entry
JDM1_0798 CDS
T00946
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Pathway
lpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDM1_0798 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpj03019
]
JDM1_0798 (recQ1)
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_0798 (recQ1)
Enzymes [BR:
lpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JDM1_0798 (recQ1)
Messenger RNA biogenesis [BR:
lpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JDM1_0798 (recQ1)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JDM1_0798 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ACT61685
LinkDB
All DBs
Position
857949..859757
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AA seq
602 aa
AA seq
DB search
MIDLAAAQQVLKTTFGYDEFRPGQKAVIEQVLAGENTLAIMPTGGGKSLCYQIPALLFQG
LTVVVSPLISLMKDQVDALNDNGIAATFINSSLDFQEINERLQELRAGDYTLLYVAPERL
DSDYFIQALGRLPIQLLAIDEAHCISQWGHDFRPSYLALSTAIEQLPTHPQVLALTATAT
EQVAADICGRLAIDPQHEVNTGFARDNLDLTVVKDQDTDRYILDYLKVNHGEAGIIYAST
RKEVMRLTSLLQKHDIKATPYHAGLDDAVRRQNQEDFLYDRVDVMVATNAFGMGIDKSNV
RFVIHAQVPGTLEAYYQEAGRAGRDGLPSEAILIFRPVDIQLQHFFIDESEMDTEHRHLA
YQKLQVMTRYANTQGCLQQFILKYFGEKSAPCGRCSNCTDQRESQDITTAAQQVLSCVVR
LHSRFGKGVVAQVLTGANNQRVRESNLNTLSTYGLMSGQRQKSVVELIDFLTASGYLQSV
GGQYPTLTVSASGVAVLKGTTTVHRKTAQKVQQTVPENSALFEQLRTLRRQLAEEQGVPP
FVIFSDRTLHSMCDLMPEDDAAFLTVKGVGTSKLEKYGETFMATIRAAAHAESATSTDEE
TD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgattgacttagcggcggcacagcaagtattaaagaccacgttcggatatgatgaattc
cgaccggggcaaaaagcagtgattgaacaagtgttggccggtgaaaacaccctagcgatt
atgccgactgggggtggtaagtcattatgttaccaaatcccagcgttactttttcagggg
ttgaccgtcgttgtctcaccattaatttctttaatgaaagatcaggtagacgcgttaaat
gataatggcatcgcggcgacttttattaacagttcactggatttccaagagattaacgaa
cggctccaagaactacgggcgggggattataccttactttacgtggcacccgagcggtta
gattcggattactttattcaagcgctgggccggttgcccatccaactgttagcaattgat
gaggcccactgtatttcacagtgggggcacgattttcgtcctagttatttagcgctcagc
acggcgatcgaacaattgccgacccatccgcaagttctagctttaacggcgacggcaact
gagcaagttgctgcggatatttgcggccgcttagcgatcgatccacaacatgaagtgaat
actggttttgcccgcgataacttggatttgacggtggtcaaggaccaagacacggaccgt
tacattttagattatttgaaagttaatcatggtgaagccgggattatttacgccagcacc
cgtaaagaagtgatgcgtctgacgagtttgttgcaaaagcatgatattaaggccacgccg
taccacgctgggctagatgatgcggttcggcggcaaaaccaagaggatttcttgtacgac
cgtgttgacgtcatggtggcaaccaacgcgtttggaatgggcattgataagagtaacgtg
cgttttgtgattcacgcgcaggtccccggaactttggaagcttattatcaggaagccggt
cgggctggccgggatgggttacctagtgaggcgattttgatttttcgaccggttgatatt
caacttcagcacttctttattgatgagtcggagatggatacggagcaccgacacctggcg
tatcagaagctacaggtgatgacacggtatgcgaatacccagggctgtttacaacagttt
atcttgaaatactttggtgaaaaatccgcgccgtgtggtcggtgtagtaattgtactgat
cagcgggagtcacaggatatcaccacggcagctcaacaagtcttatcgtgcgtcgttagg
cttcattcccggttcggtaaaggggtcgtggcccaggtattgacgggcgctaataatcaa
cgggtccgcgaatcgaacctcaatacgttgtcgacgtacgggttgatgtccgggcagcga
cagaagagtgtcgtggaactgatcgattttttgactgcgagcggttatttgcagtcggtg
ggtggtcagtatccaacgctgacagtctcagcgagtggagtggccgtgcttaaaggaacg
accacggtacaccgaaagacggcccaaaaggtgcagcagacggtgccagagaacagtgcc
ctcttcgaacaattgcggacacttcggcgccaattggcggaagaacagggcgtaccacca
tttgtgattttttctgaccggacgcttcattcgatgtgtgacctgatgccagaagacgac
gcagctttcttaacggtcaaaggggtcgggaccagcaaacttgaaaagtatggtgaaacc
tttatggcgacgattcgagcggcagctcatgcggaatcagcaactagcaccgatgaggaa
accgattag
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