Lactiplantibacillus plantarum JDM1: JDM1_1298
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Entry
JDM1_1298 CDS
T00946
Symbol
sbcD
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
lpj
Lactiplantibacillus plantarum JDM1
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_1298 (sbcD)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JDM1_1298 (sbcD)
Archaeal homologous recombinant proteins
JDM1_1298 (sbcD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
ACT62185
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All DBs
Position
complement(1395756..1396937)
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AA seq
393 aa
AA seq
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MKLLHTADWHIGRTLNGYSLLDEQEAAFKQILTIALAEKVDGIVIAGDIYDRAVPSTDAV
TSLDHMLQAINIEHHLPIYAIAGNHDGAKRLNYGREWLAYNNFHINTLLAEAFTPIETPT
AQIFMLPFFDPIDARVYYQQQGLPEKQVKAIHTIHDAMQRVVSDLVATFDPEKRHLLITH
FTVTPKADDDLELTSETTSKVGGLATLTTDLFADFDYVMLGHIHTRLASPDKDRIRYAGS
PVKFNVKEANPKFHGKGVEIVTITPTAITHEFKPIQPQTDLVTLRAPWETLLDPNFYQQQ
PLKQAWFAITVQEFDRSKHLNVRAQLEQIYGTIVELDYESNHQATAISGPKNMNELSPDA
IVGQFFHAITGNQLSTTQQQLVDQIFVNLRKED
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaagttactacatacagcggattggcacatcggccggacgcttaacggttattctttg
ttagatgaacaggaagcagcgttcaagcaaattctaacgattgcattggctgaaaaagtt
gatggtatcgtgattgctggggacatctacgaccgggccgttccgagtaccgatgcggtc
acttcacttgaccacatgctgcaggctattaatatcgagcatcacctaccaatctatgcc
attgctggcaaccatgatggcgccaaacgtctcaactacggtcgtgaatggctagcctat
aataattttcatatcaatacgttactagccgaggccttcacgcccatcgagaccccaacg
gcacaaatctttatgttaccgttttttgaccccattgacgcgcgggtctactatcagcaa
caaggtttgcccgaaaaacaagtcaaggcgattcacaccattcacgatgcgatgcaacgc
gtggttagtgacctcgttgccacctttgatcctgaaaaacggcacttgttgattactcat
tttaccgttacacccaaagcagatgacgacttggaattaacaagtgaaacaacttccaaa
gtgggcggtttggcgacgctgaccaccgatttattcgcagacttcgactacgtgatgctg
ggccacattcacactcggttagcctcacccgacaaagatcgaattcgttatgccggtagc
cccgtcaaatttaacgtcaaggaagccaaccctaagttccatggcaaaggtgttgaaatt
gtgacaatcacacccactgcgatcacccatgaattcaagccaattcagccgcaaactgac
ttggttacgttgcgtgcgccttgggaaacgttacttgatcccaacttttatcagcaacag
ccgttaaagcaggcttggtttgcgatcaccgtccaggaattcgaccgtagtaagcatctg
aacgtccgggcgcaactcgaacaaatctacggcacaattgtcgaactggactacgaatcg
aaccaccaagccaccgccattagtggcccaaaaaacatgaacgaactgagtcctgatgca
attgttgggcaatttttccacgcgattactggtaaccagctctcaacgacacaacaacaa
ctcgttgaccagattttcgtcaacttaagaaaagaggattag
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