Lactiplantibacillus plantarum JDM1: JDM1_1555
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Entry
JDM1_1555 CDS
T00946
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpj03032
]
JDM1_1555 (topA)
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_1555 (topA)
Enzymes [BR:
lpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JDM1_1555 (topA)
DNA replication proteins [BR:
lpj03032
]
Prokaryotic type
DNA Topoisomerases
JDM1_1555 (topA)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JDM1_1555 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Alpha-2-MRAP_N
Motif
Other DBs
NCBI-ProteinID:
ACT62442
LinkDB
All DBs
Position
complement(1651616..1653763)
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AA seq
715 aa
AA seq
DB search
MAASTTKAKPAAKRKTATKTATKRKSKTPAKKLVIVESPSKAKTIEKYLGRSYKVVASLG
HIRDLPKSKMGVDVDNDYEPHYISIRGKGDVIKGLRKEAKKAKAVYLASDPDREGEAIAW
HLSYLLGLDPKDKNRVVFNEITKDTVKNAFKEPRSIDMDLVDAQQARRILDRLVGYSISP
LLWKKVKKGLSAGRVQSIALDLIIQRENEIKAFKPQEYWTIDSEFQKGRSKFMASFYGTH
GKKQPLDDNDAVQKILGQLDRNGDFNVVKVVKKERKRFPAPPFTTSTMQQDANRKLNFRT
RKTMMAAQQLYEGINVGGKEGSVGLITYMRTDSTRISSIAKHEASQFLHKEYGAEYAATK
PVKGKLPEGAQDAHEAIRPSSVFRTPASIKDYLTKDQFRLYQLIWSRFVASQMTPEVLDT
MAVTIDQNDVQFRANGSKTKFAGFTKIYDKTEKNNVLPDLSEGDVVKLSKTDPQQHFTQP
PARYSEANLIKALEENGVGRPSTYAPTLDTIQRRYYVKLEARRFVPTELGEIVNDIIQEY
FPDVVNVGFTASLEEQLDATEEGKENWVKVVDSFYKPFSKEVATAEESMEKIQIKDELAG
FNCDICGAPMVVKMGRYGKFFACSRFPDCRNTKPIVKEIGVVCPQCKKGQVIERKSKKNR
IFYGCSRFPDCDFVSWDKPVGRDCPKDGHYLVEKKVKGGKQVLCPNGDYTENVQK
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtggctgcaagtacaactaaagccaaaccggcggcaaagcggaagaccgcaactaaaact
gctaccaagcggaaaagcaaaacacccgctaaaaaattggtgatcgtggaatcaccatct
aaagcaaaaacgattgaaaaatatttaggtcgttcttataaagtcgtcgctagtctgggc
catattcgggatttaccgaagagcaagatgggtgtcgacgtggataacgactatgaaccg
cactatatctcgattcgcggtaagggtgatgtgatcaagggattgcggaaagaggctaaa
aaagccaaagccgtgtacctcgcatctgacccggaccgtgaaggggaagccattgcttgg
cacttatcctatttattaggacttgaccctaaggataaaaaccgggtcgtcttcaatgaa
atcaccaaggatacggtaaaaaacgcttttaaggaaccgcggtcaattgatatggatcta
gtggatgcccaacaggcccggcgaattttggaccggttagtgggttactcaattagtcca
ttattgtggaaaaaggtcaaaaaggggttatcggccggtcgggtgcaatcgatcgcgcta
gatttgatcattcaacgtgaaaatgaaattaaagcgttcaaaccccaagagtattggacg
atcgatagtgaatttcaaaagggtcgttccaaattcatggcaagtttttatggaacccat
ggtaagaagcaaccgttggatgacaacgatgcggtgcaaaaaatcttgggccaattagac
cggaatggcgattttaatgtcgtcaaagtcgtcaaaaaagaacgtaaacggttcccggcg
ccgccatttacaacctctaccatgcaacaggatgccaaccggaagttgaatttccggacg
cgtaagaccatgatggcagcgcaacaattatatgaaggcatcaatgttggtggtaaggaa
ggtagcgtcggcttaatcacttatatgcggactgactcgacgcggatttcgtcgattgcg
aagcacgaagcgtcacaattcttgcataaagaatacggcgcagaatatgcggccaccaaa
cctgtcaagggcaagttaccagaaggcgctcaggatgcccatgaagcaatccgaccctca
tccgtcttccggacaccagctagcatcaaagactacttgacgaaggatcaattccggtta
taccagctgatctggtcacggtttgtggctagtcagatgacgcctgaagtacttgataca
atggcggtcacgatcgaccaaaatgacgtccaattccgggcgaacgggtcgaagacgaag
tttgctggttttacgaagatctacgataagacggaaaagaataacgtcttaccagattta
agtgaaggtgatgtggtcaagttatcgaagactgatccgcaacaacacttcacccagcca
cccgcacgttactctgaagccaacctcatcaaagcattggaagaaaatggtgtggggcga
ccgtcaacgtacgcaccaaccctggatacgattcagcggcgctactacgtcaaattagaa
gcgcgccggtttgtgccgactgaactcggtgagatcgttaacgatattattcaggaatac
ttcccggatgtcgttaatgtcggctttactgccagtttagaagaacagttggatgcgact
gaagaaggtaaggaaaactgggtcaaagtcgtcgatagtttctacaagccgttttctaaa
gaagttgcaacggctgaggaaagtatggagaagatccaaatcaaagacgaattagcgggc
ttcaattgtgatatttgtggcgcgccaatggttgtgaagatgggccgttacggcaaattc
tttgcctgctcccgtttcccggattgtcgtaatacgaagccgatcgttaaagaaattggt
gtcgtttgtccgcaatgtaagaagggccaggtcattgagcggaaatcgaagaagaaccgg
attttttatggttgttcccgcttcccagattgtgactttgtctcttgggataaaccggtt
ggccgtgattgcccgaaggatggccattacctggtcgaaaagaaggtcaaaggtggcaag
caagtgctttgtccgaatggcgattataccgaaaacgttcaaaaataa
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