Lactiplantibacillus plantarum JDM1: JDM1_1585
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Entry
JDM1_1585 CDS
T00946
Symbol
recQ2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Pathway
lpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDM1_1585 (recQ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpj03019
]
JDM1_1585 (recQ2)
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_1585 (recQ2)
Enzymes [BR:
lpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JDM1_1585 (recQ2)
Messenger RNA biogenesis [BR:
lpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JDM1_1585 (recQ2)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JDM1_1585 (recQ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
Helicase_C_2
AAA_22
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ACT62472
LinkDB
All DBs
Position
complement(1682454..1683893)
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AA seq
479 aa
AA seq
DB search
MSEDELYELLKTKYGFDEFRPGQLAVIQKLLAGQDVLAVLPTGTGKSLIYQLVGTALPGL
VVVVSPLISLMQDQVARLNYQGEKQVAALTSQLDYGARQYLLNHLGQLKFLFISPEMLGQ
DIIQTALMQVQLALLVIDEAHCISTWGPDFRPDYRRLGQIRQRLQAPTTLMLTATATQRV
RQDILTQLTVPDAQQVLYSVNRPNIYLAVEQVNDEASKRATLQHLVTSARGPVIVYFTSK
RQTDLIAEWLRTTTTLRVAAYHAGLATDDRFKIQQQFMAGQLDVICATSAFGMGINKADI
RLVIHYHLPTTLADYVQEIGRAGRDGQQAMAIMLYAPGDENLVRNLNELTAATPNEIQQD
YSRYQAQQPPTDDRSKVLQSYWLQGTPPTTVATIFADRQAAKERELRALMGYVQTTTCHR
TVMLTYFGEPAVTHTDQCCQLAGEPLPLAALGLMATHDESTATIMSWDQHLAQLFLPNS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagatgaattatatgagctgttgaaaacgaaatatggcttcgatgaatttcgc
cccgggcagctagccgtcattcagaaattattagcaggtcaagatgtcttggcagtgtta
ccaactgggaccggcaaatcattgatctatcaactcgtcgggaccgcactgcccgggcta
gttgtggtggtttcaccgctgatttccttgatgcaagatcaggtggcgcgcttaaactat
caaggcgaaaagcaagttgctgctttgacctcccaactagattatggtgctcgccagtat
ctgttgaatcatttagggcagcttaaattcttgttcatttcgccggaaatgttgggtcaa
gacattattcaaacagcgctgatgcaagtgcaactggcgttattagttatcgacgaggcc
cactgcatttcaacttggggaccagattttcgccctgactaccgtcgccttggtcaaatt
cgacaacggttacaggcaccgacaacgctaatgctcacggcaacggctacacaacgcgtt
cgacaagatattttgacacaattaaccgttccagatgcccagcaagtcttatattcggtt
aatcgtcctaatatttacttagcagtcgaacaggtcaatgatgaagctagtaaacgcgcg
accttgcaacatttagtgacaagtgcgcgcggaccagtcatcgtttactttacttccaag
cggcaaactgatttgatagcggaatggctacgaacgacaaccacgttacgggtcgcggct
tatcatgccggcttagcgactgatgaccgtttcaagatccagcagcagttcatggcagga
caattggatgtgatctgtgctacatctgcttttggaatgggtatcaacaaagctgatatt
cgcttagtgatccactatcatttaccgacgactttggccgactatgttcaagaaattggg
cgcgcaggtcgtgatggtcagcaggcgatggcgattatgttgtacgcaccaggtgacgaa
aacctggtgcggaatttgaacgaattgacggctgcgactcccaatgaaattcagcaagat
tatagccgttatcaagcgcagcagccaccgactgatgatcgtagtaaggttttgcagtca
tactggctacaaggaactcctccaacgaccgtggcaacgatttttgctgatcgccaagca
gctaaggaacgtgaattgcgggcgctcatgggttacgtccaaacgacaacttgtcatcgg
accgtgatgttaacttactttggtgagccagctgttacccatacagatcagtgttgtcag
ttggctggtgaaccactaccgctggctgcgttagggttgatggcgacgcatgatgagtca
acagccacgataatgtcgtgggatcagcacttagctcaattgtttttaccaaattcttaa
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