Lactiplantibacillus plantarum JDM1: JDM1_1696
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Entry
JDM1_1696 CDS
T00946
Symbol
truB
Name
(GenBank) pseudouridylate synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpj03016
]
JDM1_1696 (truB)
Enzymes [BR:
lpj01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
JDM1_1696 (truB)
Transfer RNA biogenesis [BR:
lpj03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JDM1_1696 (truB)
Prokaryotic type
JDM1_1696 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
ACT62583
LinkDB
All DBs
Position
complement(1799952..1800875)
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AA seq
307 aa
AA seq
DB search
MLNGILPLYKPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFL
VASGKEYQGSITLGFATTTEDLDGEEIARQAVTEPFTSDQVDAALAQMTGAITQIPPMFS
AVKVNGRRLYDYARSGETVERPERHITISSFKQRQASTYDSATQTQTIYFTVACSKGTYV
RTLAVDVGKVLGVPAVMSDLTRLKSGGFTLDETVTFEEIAAHVDAGTAGALLAPIDKALS
QYPRVTLTDEQWQRVKNGAFITAAEGQQTDPDANTMVALVYQNSLKCLYSYRPDEQRYKP
FKMFAVN
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacgggattctaccattatataaacctcgtgggatgacgagctttgactgtgtc
gctaaaatccgacgactctatcagacccgcaaagtaggtcattcagggacactggaccca
aatgtggatggcgttttaccgatttgtattgggaatgcgactaaagttgtgcaattttta
gtggcttctggcaaagaataccaagggagcattaccctcggatttgcaacgactactgaa
gatttagatggtgaggagattgcgcgccaagcggtcacagagccgttcacaagtgaccaa
gttgatgctgcgctggcacagatgacgggggccattacgcaaattccaccgatgttttca
gcagtaaaagtaaatgggcggcgtttatatgactatgcgcgcagtggtgaaactgtcgag
cgcccagaacggcatatcacaattagcagcttcaagcaacggcaggcatctacctatgac
tcggcaacccagactcagacgatctattttacggtcgcttgtagtaaagggacttatgtt
cgcacgctagcggtggatgtcggcaaagtgctcggggtacccgctgtgatgagtgatttg
acccgattaaagagtggcggctttactttagatgaaaccgtgacctttgaggaaatcgcg
gcccacgtcgatgctggaacggccggagcattattggcgccaattgataaagctttaagt
cagtacccgcgagtcacgttaacggatgagcagtggcaacgggtcaaaaatggggccttt
attacggcggcagaagggcaacaaactgatccagatgcgaacacgatggttgcgttagtt
taccaaaacagcctaaaatgtctatatagttatcgaccggacgaacagcggtacaagccg
ttcaaaatgtttgcggtcaattaa
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