Lactiplantibacillus plantarum JDM1: JDM1_1823
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Entry
JDM1_1823 CDS
T00946
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Pathway
lpj04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
JDM1_1823 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpj03016
]
JDM1_1823 (trmU)
Enzymes [BR:
lpj01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
JDM1_1823 (trmU)
Transfer RNA biogenesis [BR:
lpj03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
JDM1_1823 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_M
tRNA_Me_trans_C
NAD_synthase
Asn_synthase
QueC
ThiI
DUF7411
Arginosuc_synth
ATP_bind_3
Motif
Other DBs
NCBI-ProteinID:
ACT62710
LinkDB
All DBs
Position
complement(1934373..1935497)
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AA seq
374 aa
AA seq
DB search
MTDHSNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDDTDENGVCTATEDYKDVA
KVADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLG
ADYIATGHYARLQHDEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKPDVR
KLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFDGQVKGEHAGLMYYT
IGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFVTDEDL
GNDFHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFYNGEECLGSGM
IDAAYNDERVLQYV
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcacagtaacacgcgtgtcgttgtcggcatgagtggtggtgttgattcatcc
gtagtggcgttgctcttgaagcagcaaggttatgacgtggtgggcgtgtttatgaagaat
tgggacgatacggacgaaaatggtgtctgtaccgcgaccgaagattataaagatgttgcc
aaagtggcagataaaattgggattccttattactcgattaacttcgagaaggaatattgg
gaccgggtcttcacgtacttcttagacgaatacaagaagggacgcacaccgaaccccgat
gttatctgcaacaaagaaattaagtttaaggcgtttttagattacgcgatggatttaggg
gcggattacattgccactggtcattacgcgcggttacaacatgatgaagatggcacgatg
caccttttgcgtggtgttgacagcaacaaggaccaaacttatttcttaagtcagctggat
tcgaagaccttacaaaaggtgatgttcccacttggcgaaatggtgaagcctgacgttcgt
aagcttgctttaaacgcgggcttggcaacagctaagaagaaggactccgttgggatctgc
ttcattggcgaaaagaacttcaaggaattcctaggccattacttaccagcaacgcccggt
aagatgatgactttcgatggtcaggtgaagggtgagcacgccgggctgatgtattacacg
atcggccagcgccgcggacttggtatcggtggtgatggcgaggataacgagccatggttc
gtggtcggcaaagatttgaagaagaatattctgtatgttggcaagggctaccataatccg
cacctgtacgcgacccacttaaaggcgtccgatttacactttgtgactgatgaagactta
ggtaatgactttcacgtgacggcaaagttccgttaccggcaaaaagattctggtgtgacg
gtgcattttaatgatgaccacacggaagttaccgtgacttttgatgatccagttcgggcg
attactcctggacaggccgttgtcttctacaacggtgaggaatgcttaggttccggtatg
attgacgctgcttataatgatgagcgcgtcttacagtatgtttag
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