Pseudolactococcus piscium: LACPI_0006
Help
Entry
LACPI_0006 CDS
T03909
Name
(GenBank) Transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpk
Pseudolactococcus piscium
Pathway
lpk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LACPI_0006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpk03400
]
LACPI_0006
Enzymes [BR:
lpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LACPI_0006
DNA repair and recombination proteins [BR:
lpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LACPI_0006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_16
AAA_22
RecG_dom3_C
TniB
Motif
Other DBs
NCBI-ProteinID:
CEN27206
UniProt:
A0A0D6DU30
LinkDB
All DBs
Position
I:complement(11205..14705)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKLTTLFDETLPVSKWHRDLNKASRTLFTGIQGTIKALLMATAYDNYPDKYIIITDSQYH
ASELYSDLAEIIGEDKIFQYFSDDNIFAEYAIASKERIAYRLDALTFLQDEEADGFLIIP
IFALRNLLPNPKTFRNFKLTFTVGQELDVEALAKQLSTRSFDLVQRVMSPGEFSKRGDIL
DIYPLTAENPIRIEFFGDEIDGIRYFDIETQRSLQEVNTVTITPASDFVLSQDDFARGVN
NLSSIPDLNEQQKSYFDELIGAAKHDHYHPDLRKFSEFFYEDKWTLLDYFPKNTPLFIDD
FQKITEMDHKITHETAEFSLSEKILNRSIDGMIYLSDTIHSLRQYKPATFFSNFQKGLGN
LKFDQLHNFNQHTIQSFFGQIQLLKVEVEHLTKINYTVILAVSKEKQGKLIDSLQDIDVS
FTLSSLQAIQENKVNIVNINLANGFNLLEEKIVLITENEIFGKNKKRRTKRLNITNAERL
KDYNELSVGDFVVHQTHGIGKYLGLETIEIANIHRDYLTIQYQNNDTISIPVDQVDLLTK
YAAGEGKPPKVNKLNDGRWKRTVKTVSKQIEDISADLIKLYAARESQKGFAFAPDDASQQ
EFDDAFSYTETEDQLRSVKEIKQDMERVRPMDRLLVGDVGFGKTEVAMRAAFKAINDHKQ
VAILVPTTVLAEQHYNNFRERFNDFGVNVAVMSRFQTKKEQTEILEKLKKDRVDLLIGTH
RLLSKDVVFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMMGIR
DLSVIETPPTNRYPVQTYVMETNFGVLRDAVLREISRGGQVFYVYNRVDTIEQKVSQISE
LIPEARVSYIHGQMSEIQLENTLLEFINGEYDVLVATTIIETGVDIPNANTLFVEDADRM
GLSQLYQLRGRVGRSNRVAYAYFMYQPDKSLTDVSEKRLEAIKGFTELGSGFKIAMRDLS
IRGSGNILGAEQSGFIDSIGFDLYAQLLEEAVNKRLGKTKKTAKSSSEISLGIDAFLPTD
YISDQRQKIEIYKRIREIESRVYYQDLQDELIDRFGEYPDTVAYLLEIGLLKCFADHALV
DKIERQLVNITYTMSKAANHHFMPQDYFDALSKTTLKAKIGEEKGLMMIRFDIRQVSEAA
YLAQIMAFTERLSRIRDEKINEKTID
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttacaaccctatttgatgagactctaccagtaagtaaatggcatcgtgattta
aataaagcgtcacgtaccttattcactggtattcaaggtacgatcaaagcactgttgatg
gctacagcatatgataactaccctgataaatatattatcatcacagatagtcaatatcac
gctagtgaactctatagtgatttagcagagatcattggtgaagacaagatcttccaatat
ttctctgatgataatatttttgcagaatatgcaattgccagtaaagaaagaattgcttat
cggctagatgcacttactttcttacaggatgaagaagcggatggttttttaatcataccg
atttttgctttacgcaatttattaccgaatccaaaaacgtttaggaatttcaagttgaca
tttacagtcggtcaagagcttgatgttgaggcacttgctaagcaattatcaacacgctct
tttgaccttgtccaacgtgtgatgagccctggagagttttcaaaacgcggtgatatttta
gatatttatcctttaactgccgaaaatccgattagaatagagtttttcggtgacgaaatc
gatggaattcgctactttgatatagaaacacaacgctctttacaagaagtaaatacagta
acgattacaccagcatctgactttgtcctaagtcaagatgactttgcacgtggtgtcaat
aacctatcaagtataccagatttaaatgagcaacaaaaatcctattttgatgaactcatt
ggtgctgctaaacatgatcactatcatcctgatttaagaaaatttagcgaatttttttat
gaagacaaatggacattactagattattttccgaaaaatacgccactatttattgatgat
tttcaaaaaataactgaaatggatcataaaatcacccacgagacagccgagttcagttta
tctgaaaagatacttaatcggtctattgatggtatgatttacttatctgatacaattcat
agtttaaggcagtataagccagcaacttttttctcaaattttcaaaaagggctaggcaac
ttaaaatttgatcaattacataattttaatcagcatacaatccaatctttctttggccaa
atacaactactaaaagttgaagtagagcatttaactaaaattaactacacagtaatcctt
gccgtttcaaaagagaagcaaggtaagttgatagatagtttacaagatattgacgtctct
tttacactatcctcgcttcaagcaattcaggaaaacaaagtcaacatcgtcaatataaat
ttggcaaatggctttaatctacttgaagaaaaaatcgtgctcattacagaaaatgagatt
ttcggtaaaaataaaaaaagacgaactaaaagacttaacattacaaatgcagaacgactt
aaagactataatgaattatcagttggcgattttgtcgtgcatcaaacacatgggattggt
aagtacttaggtcttgagacgattgaaattgccaatatacatcgggattacttaacgatt
caataccagaataatgacacaatctctattccggttgaccaagtcgatttactaactaag
tatgctgcaggtgaaggaaaaccacccaaagtcaacaaactgaatgatggtagatggaaa
cgaactgtcaaaactgtcagcaaacaaattgaagatatctcagctgatttaatcaaactc
tatgcagctagagaaagtcaaaagggatttgcttttgcccctgatgatgctagtcagcaa
gaatttgatgatgccttttcctatactgaaacagaggaccaactacgctctgtcaaagaa
atcaaacaagacatggaaagagtccgtcctatggacagattattagtcggtgatgtgggg
tttggtaaaacagaagttgccatgcgtgctgcctttaaggcaataaatgaccataagcaa
gttgctattttagtccctacaacggtcctagcagagcaacactacaataattttcgagag
agattcaatgattttggtgtaaacgtcgctgtgatgtctcgttttcaaactaaaaaagag
caaactgaaatactcgaaaaattaaaaaaagaccgtgttgatttactaattggtacacac
cgtctcctatctaaagacgtcgtctttttcgatttaggcttaatgatcatcgatgaggag
caaaggtttggtgtcaaacataaggaaagacttaaggagcttaaaacccaagttgacgtc
ttaacattaacagctacaccgattccccgtaccctacatatgtctatgatggggattcga
gacctatctgtcattgaaacaccacctactaatcgttatcctgtacagacctacgttatg
gagacaaattttggtgtgcttagagatgctgttttaagagaaatatcacgtggcggacaa
gttttctatgtttacaaccgtgttgacacaattgaacaaaaagtatcccagatttcagag
ctgattcccgaagcacgtgttagctacatacatggtcaaatgagtgaaatacagttagag
aataccttgcttgagtttataaatggcgaatacgatgttctggttgcgacaacaattatt
gaaactggtgtggacatcccaaatgcaaatacgctatttgtagaggatgctgatcgaatg
gggctttctcagctttatcaactgcgaggtcgtgttggccgttctaatcgtgtcgcctat
gcctatttcatgtaccaacccgataaatcactgactgatgtttctgaaaaaagactagag
gcgattaagggatttactgaattaggatccggttttaaaattgccatgcgtgatttatct
attcgtggatctggtaatattttgggtgctgaacaatcaggctttattgattcaataggc
tttgatttgtatgcgcaacttctagaagaagcagtcaataaaagacttggtaaaacaaag
aaaacagcaaaatcaagttctgaaatttcacttggtatcgatgccttcttaccaacagac
tatatttctgatcaacgacaaaaaatagaaatttataagcgtattagagaaatagaaagc
cgtgtctactatcaagatttacaagatgagttaatcgatcgttttggtgaatatcctgat
actgttgcttatttattagaaattggtctgttaaaatgttttgctgatcatgcattagtt
gacaaaatagagcgacaacttgtcaatatcacgtatacgatgagtaaagcagccaatcat
cactttatgccacaagattactttgatgccctctccaagacaactctaaaagctaaaatt
ggtgaagaaaaaggcctgatgatgattcgttttgatattagacaggtatcagaagcagct
tatcttgcacaaattatggcctttacagagcgcctaagtcggattagagatgagaaaata
aatgaaaagaccattgattaa
DBGET
integrated database retrieval system
