Lactococcus piscium: LACPI_0448
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Entry
LACPI_0448 CDS
T03909
Symbol
srmB
Name
(GenBank) DEAD box ATP-dependent RNA helicase SrmB
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpk
Lactococcus piscium
Pathway
lpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACPI_0448 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpk03019
]
LACPI_0448 (srmB)
03009 Ribosome biogenesis [BR:
lpk03009
]
LACPI_0448 (srmB)
Enzymes [BR:
lpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LACPI_0448 (srmB)
Messenger RNA biogenesis [BR:
lpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LACPI_0448 (srmB)
Ribosome biogenesis [BR:
lpk03009
]
Prokaryotic type
rRNA helicases
LACPI_0448 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
CEN27648
UniProt:
A0A0D6DV63
LinkDB
All DBs
Position
I:458547..460124
Genome browser
AA seq
525 aa
AA seq
DB search
MKFTELGLSEDILSAISKAGYETPTPIQEQTIMLALEGKDVIGQAQTGTGKTAAFGLPTL
DKIDINGGLQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVFGGASIDKQIKALKSGAH
VVVGTPGRMVDLIKRRALQLGDIETLILDEADEMLNMGFIDDLEFIIKATPTATRQTLLF
SATMPDAIKKIGVKFMKEPQHVKIVSKEMTSDLIDQYYVKTKEFEKFDVLTRLIDVQKPE
LAIIFGRTKRRVDEITRGLKLLGYRAEGIHGDLAQQKRLAVLRDFKNDNLDVLVATDVAA
RGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGLSITFVSNNEMGYLRAIERLTKK
EMKGMKPPTREEAYQASLAVAFDEIKRDLTDEKISAKLNKFDEDADKLLAEYDAKLLVSL
LLQAKVSDPDTRPKVDIAPEKPLPFNGEGGKGGGGGRGGNRGGGSRGRNDRRGGGGGFNR
DKRSGGGRDRDDRNKKDYYKKDKQKVHPHATEKKPGFVIRNKGDK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaacttggtttatcagaagacattttatcagctatcagtaaagctggt
tacgaaacaccaacacctatccaagaacaaacaatcatgcttgccttagagggtaaagac
gtgattggtcaagcccaaactggtactggtaaaacagctgcctttggtctaccgacactt
gataaaattgatatcaatggtggcttgcaagcgttggtgattgcaccaactcgtgagcta
gctgttcaatctcaagaagaattgttccgatttggccgtgacaaaggcgttaaagtacgt
tcagtctttggtggtgcgagtattgataaacaaattaaagcacttaaatctggtgcgcat
gtggttgttggtacaccaggacgtatggttgacttaatcaaacgtcgtgctttgcaactt
ggggatatcgaaacattaatccttgatgaagcagatgaaatgcttaacatgggctttatc
gatgaccttgagttcatcatcaaagcaacaccaacagcaacacgtcaaacactcttgttc
tcagcaacaatgcctgatgcaatcaagaaaatcggcgtgaaattcatgaaagaaccacaa
cacgttaaaatcgtatcaaaagaaatgacttctgatttgattgatcaatactacgtgaaa
acaaaagaatttgaaaaatttgatgttttaacacgtttaatcgacgtacaaaaaccagaa
ttagcaatcatctttggtcgtacaaaacgtcgtgttgatgaaattacacgtggtttaaaa
cttctcggctaccgtgctgaaggtatccatggcgatttagcacaacaaaaacgtttagca
gtattgcgtgactttaaaaatgataacttagatgtactcgttgcgactgacgttgcagcg
cgtggtcttgatatctcaggcgtaacacacgtctataactacgatatcacacaagatcaa
gaatcatacgttcaccgtatcggccgtactggtcgtgctggtaaatcaggtctatctatt
acgtttgtatctaacaacgaaatgggttacctacgtgcaatcgaacgtttgactaagaaa
gaaatgaaaggcatgaagccaccaacacgtgaagaagcttaccaagctagcctcgctgtt
gctttcgatgaaatcaaacgtgatttaactgatgaaaaaatttcagctaaattaaacaaa
tttgatgaagatgctgataaattactagctgaatacgatgctaaactattagtttcattg
ttacttcaagctaaagtcagcgatcctgatacacgtcctaaagttgatatcgcacctgaa
aaaccattaccatttaacggtgagggtggcaaaggcggcggcggaggccgtggtggtaat
cgtggcggcggtagtcgtggccgtaatgatcgtcgtggcggcggtggcggttttaaccgt
gacaaacgcagcggtggtggtcgcgatcgtgatgaccgtaacaaaaaagattattacaaa
aaagataaacaaaaagtacatcctcatgcgactgaaaagaaacctggtttcgttattcgc
aacaagggtgataagtaa
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