Lactococcus piscium: LACPI_0458
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Entry
LACPI_0458 CDS
T03909
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta' RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpk
Lactococcus piscium
Pathway
lpk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LACPI_0458 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpk03021
]
LACPI_0458 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpk03400
]
LACPI_0458 (rpoC)
Enzymes [BR:
lpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LACPI_0458 (rpoC)
Transcription machinery [BR:
lpk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LACPI_0458 (rpoC)
DNA repair and recombination proteins [BR:
lpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LACPI_0458 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CEN27658
UniProt:
A0A0D6DV71
LinkDB
All DBs
Position
I:473005..476631
Genome browser
AA seq
1208 aa
AA seq
DB search
MVDVNKFESMQIGIASPQKIRFWSFGEVKKPETINYRTQKPEREGLFDERIFGPSKDWEC
SCGKLKGVFYKNQVCELCGVQVTRAKVRRERMGHIELAAPTSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVIDPKETALEKKQLLTEREYREQMLKNGFGSFVAKMGAEAIQDLL
MAVNLPAEISALKEELQTATGQKRVKAIRRLDVLDAFNKSSNKLEWMVLNVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPNIIVQNEKRMLQEAVDALVDNG
RRGRPITGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKMYQCGVPR
EMAIELFKPFVMSEVVKRDMAPNIRAAKRKVERQDPDVWDVLEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGRAIRLHPLVCEAYNADFDGDQMAIHLPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYITMEEAGREGEGMVFANADEAEVAWRNGFVHLHTRVGI
ATKSLNKPWTDDQKDKIMATTVGKVLFNAIMPEEFPYLNEPTQDNLTAQTDDRFFMAPGE
NVKTFIENLDLVPPFKKKHLGNIIAEVFKRFRTTLTSEMLDRLKDLGYHHSTKAGLTVGI
ADIPVVEDKHLIIEAAHDKVAMITKQFRRGLITDDERYTAVTDVWRGAKEELERRLIDAQ
DMSNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGKIMELPIISNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGSDRGLVISDIATGKEMVEPLS
ERLNGRYTRKSLVHPETGELIIGEDELITEAIAAQIIAADIKEVTIRSVFTCKTRHGVCK
HCYGVNLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSEDITQGLPRIQEI
FEARNPKGEAVITEVTGEVIEITEEAATRKKEVTVKGETDTRTYEVPFASRMHVEVGDFI
HRGTPLTEGSIQPKHLLQVRDTLSVETYLLGEVQKVYRSQGVEIGDKHIEVMVRQMLRKV
RVMDAGDTDLLPGTLMDIGDFEQANQQILFDGGVPATSRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMARYRNLEPLAKKTEAPVLETE
AVVEEVTD
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggtagatgtaaataaatttgagagtatgcaaattgggattgcatcccctcaaaaaatc
cgtttttggtcttttggtgaagtcaaaaaacctgaaacaattaactatcggacacaaaaa
ccagaacgtgaaggcctttttgatgaacgtatctttggtccatctaaagattgggaatgt
agctgtgggaaacttaaaggtgttttctacaaaaaccaagtctgtgaactctgtggtgta
caagttacacgtgcaaaagtacgtcgcgaacgtatggggcatattgagttagcagcgcca
acgtcacatatctggtactttaaaggtatcccatcacgtatgggtctagccttggatatg
agtccacgttctcttgaagaaattatctattttgcaagttatgtggtcattgatccaaaa
gagacagcacttgagaaaaaacaattattgactgaacgcgagtatcgtgaacaaatgctc
aagaacggttttggttcatttgttgctaaaatgggtgctgaagcgattcaagacttattg
atggctgttaacttacctgctgaaatttctgcacttaaagaagaattacaaacagcaact
ggtcaaaaacgggttaaagcgattcgtcgtttggacgttttagatgcctttaacaaatca
agcaataaactagagtggatggttcttaacgtcttaccagttatcccaccggacttgcgt
ccgatggtacaacttgatggtggtcgttttgcgacgtcagacttgaatgatttataccgt
cgtgttatcaaccggaacaaccggttgaaacgcttgatggaattaaatgcaccgaatatc
attgttcaaaatgaaaaacggatgctacaagaggccgttgatgccttggttgataatggt
cgtcgtggtcgtccaatcactggaccaggtaaccgtccacttaaatcacttagccatatg
ttaaaagggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtcgactattct
ggtcgttcagttatcgtcgtaggtccaacactcaaaatgtatcaatgtggtgtcccacgt
gaaatggcgattgaattgtttaaaccattcgtcatgagcgaagtggttaaacgtgatatg
gcgccaaatatccgtgctgcaaaacgtaaagttgagcgtcaagatccagatgtttgggat
gtattggaagatgtgatcaaagaacatccagtattgcttaaccgcgcaccgacacttcac
cgtctcggtatccaagcctttgaaccagtattgatcgatggtcgtgcgattcgtcttcac
ccacttgtatgtgaagcctacaatgccgatttcgatggtgaccaaatggcgattcactta
ccactttctgaagaagcccaagcagaagcacgtattttaatgcttgctgctgagcatatt
ctaaacccgaaagacggtaagccagtcgttacaccatcacaggatatggtcttgggtaac
tactacatcaccatggaagaagcgggtcgtgaaggcgaaggcatggtatttgctaacgct
gatgaagccgaagtagcttggcgcaatgggttcgttcacctgcacacacgtgttggtatc
gcaaccaaatcattgaacaagccttggactgatgaccaaaaagataaaatcatggcgaca
actgttggtaaagtacttttcaacgcgatcatgcctgaagaattcccttacttgaatgag
ccaacacaagataacttaacagcgcaaactgatgaccgtttctttatggcaccaggcgaa
aatgttaagacctttatcgaaaatcttgacttggtacccccatttaagaaaaaacattta
ggaaatatcatcgcagaagtcttcaaacgtttccgtacgacattgacttctgaaatgctt
gaccgtttgaaagacttagggtaccatcactcaactaaagccggtttaactgtaggtatt
gcagatatccctgttgttgaagacaagcatctaattattgaagctgcccatgataaagtt
gccatgattactaagcaattccgtcgtggtttgatcactgatgatgaacggtatacggca
gttacagatgtatggcgtggtgctaaagaagaacttgaacgtcgtttgatcgatgcccag
gatatgtcaaatccgatcgttatgatgatggactctggtgcccgtggtaatatctccaac
ttctcccaacttgcggggatgcgtggtttgatggcagcgccgaatggtaaaatcatggag
ctcccaatcatctctaacttccgtgaaggtctatccgttttggaaatgttcttctctacc
catggtgcccgtaaagggatgaccgatacggcccttaaaacagccgattctggttacttg
acacgtcgtttagttgacgtcgcccaggatgtcattattcgtgaagatgattgtggctct
gaccgtggacttgtcattagcgatatcgcgactggtaaagaaatggttgaaccattgtca
gaacgtcttaacggtcgttatacacgtaaatcactcgtgcatcctgaaactggtgaatta
atcatcggtgaagatgagttaattactgaagcaattgctgcacaaatcattgcagctgat
atcaaagaagtaacaatccgttcagtctttacatgtaaaacacgtcatggtgtatgtaaa
cattgttatggtgtcaacttagcaacaggcgatgctgttgaagttggtgaagcagttggt
acaattgcagcccaatctatcggtgaacctggtacacagttgacaatgcgtaccttccac
acgggtggtgtagcatcatctgaagatatcacgcaaggtctccctcgtatccaagaaatc
tttgaagcgcgtaaccctaaaggggaagcagtgattactgaggtaactggtgaagtcatc
gaaattactgaagaagctgcgacacgtaaaaaagaagtgacggttaaaggcgaaacagat
acaagaacatacgaagtaccatttgcatcacgtatgcatgttgaagttggtgactttatc
caccgtggtacaccgttaactgaaggctctattcaacctaaacacttgcttcaagttcgt
gatacactttcagttgaaacgtatctccttggggaagtgcaaaaagtttatagaagtcaa
ggggttgaaatcggcgacaaacatatcgaggttatggtgcgtcaaatgctccgtaaagtt
cgtgtgatggatgctggtgatacagatctcttgcctggtacactgatggatattggtgat
ttcgaacaggccaaccaacaaattctatttgatggtggtgtacctgcgacatctcgtcct
gtccttatggggattactaaagcatctcttgaaacaaattcattcttatctgctgcatca
ttccaggaaacaactcgagtgcttacagatgctgcgattcgtggtaagaaagacccatta
cttggtcttaaagaaaatgttatcattggtaaaatcatcccagctggtactggtatggca
cgctatcgtaatcttgaaccactagcaaaaaaaactgaagctccagttcttgaaacagaa
gcggttgttgaagaagtgactgactaa
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integrated database retrieval system
