Lactococcus piscium: LACPI_0500
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Entry
LACPI_0500 CDS
T03909
Symbol
yqfR
Name
(GenBank) Probable ATP-dependent RNA helicase YqfR
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lpk
Lactococcus piscium
Brite
KEGG Orthology (KO) [BR:
lpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpk03019
]
LACPI_0500 (yqfR)
03009 Ribosome biogenesis [BR:
lpk03009
]
LACPI_0500 (yqfR)
Enzymes [BR:
lpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LACPI_0500 (yqfR)
Messenger RNA biogenesis [BR:
lpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LACPI_0500 (yqfR)
Ribosome biogenesis [BR:
lpk03009
]
Prokaryotic type
rRNA helicases
LACPI_0500 (yqfR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SMC_N
Motif
Other DBs
NCBI-ProteinID:
CEN27700
UniProt:
A0A0D6DW41
LinkDB
All DBs
Position
I:511993..513333
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AA seq
446 aa
AA seq
DB search
MLFTDFNFKPFINETLETIHFNTATPVQEKLIPIALEGRDIVGESKTGSGKTHTFLLPIF
QKINTEIDGVQAVITAPSRELATQIYNAAMAFTQFDDSIKISNFVGGTDKKRQIEKLGSS
QPHIVIGTPGRVMDLINAQALKTYTASIFVIDEADMTLDMGFLTEVDKIASTFDKKVQML
VFSATIPQKLQPFLKKYLNHPVMEKIATKTVISDTIDNWVFSTKGRGNNGAILEILQTLN
PYLAMIFANTKDRADELHSFLTNNGFKVAKIHGGVPPRERKRIMKAVQNLDYQYVVATDL
AARGIDIEGVSHIINDGIPRDLEFFVHRVGRTGRNGMGGTAITLYQPSDDAAILELEKTG
IKFTPKVIKDGEIVDSYDRDRRKKREKSREALDITMIGLVKKKKKHIKPAYKKKIGWEID
KQKTAKKRIEGRAQGRSERKAKRQSF
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgctatttacagattttaattttaaaccgtttattaatgagacattagagactatacac
tttaacacagcaacacccgtacaagaaaaattgattccgattgcgcttgaagggcgtgat
attgtcggcgaatctaaaacaggttctgggaaaacccatacctttttattgccaattttc
caaaaaataaatacagagatcgatggtgttcaagcggttattacggcaccatcaagagaa
cttgcgacgcaaatttacaatgcagcgatggcatttacgcagtttgatgacagcatcaag
atttcaaactttgttggtggaacagataagaaacgtcaaatcgaaaaattaggcagctcg
caacctcatatcgtgatcgggacacctggtcgcgttatggacttgatcaatgcacaagca
ctgaaaacttacacagcaagtatctttgtcattgatgaagcggacatgacattagacatg
ggatttttgacagaagttgataagatcgcgagtacctttgacaaaaaagtacagatgctc
gttttctctgcaacgattccacaaaaattgcaaccctttcttaaaaaatatctcaatcat
ccagtcatggaaaaaattgcaaccaaaacggtgattagtgatacaatcgataactgggtc
ttctcaactaagggccgtggtaataatggcgctatcttagagattttgcaaacacttaat
ccctatctggccatgattttcgctaatacaaaagaccgggcagatgaattacatagcttc
ttgaccaataatggctttaaagttgctaagattcatggtggtgtaccaccacgtgaacgt
aaacgtatcatgaaggccgttcaaaatcttgactatcaatatgttgtcgcgacagattta
gctgcgcgtggtatcgatatcgagggtgtgagccatatcatcaatgatggtattccacgt
gacttggaattctttgtccatcgtgttggtcggactggtcgaaatggcatgggtggtact
gcgattacgctttatcaaccatctgatgatgcagccattctggagcttgagaaaacaggc
attaaatttacaccaaaagtgatcaaagatggtgaaattgttgactcttatgaccgtgac
cgtcgtaagaaacgtgaaaaatcaagagaagcgcttgatatcacgatgattgggcttgtt
aagaagaagaaaaaacacatcaaaccagcttacaagaaaaaaattggctgggaaattgac
aaacaaaagacagctaaaaaacggattgaaggtcgtgcacaaggccgttccgaacgtaaa
gctaaacgtcaaagcttttaa
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