Lactococcus piscium: LACPI_1017
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Entry
LACPI_1017 CDS
T03909
Symbol
rnjB
Name
(GenBank) Ribonuclease J 2 RnjB
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpk
Lactococcus piscium
Pathway
lpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACPI_1017 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpk03019
]
LACPI_1017 (rnjB)
Messenger RNA biogenesis [BR:
lpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LACPI_1017 (rnjB)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
BHD_3
Motif
Other DBs
NCBI-ProteinID:
CEN28217
UniProt:
A0A0D6DWW0
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Position
I:1056372..1058114
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AA seq
580 aa
AA seq
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MSNVKIVALGGVREFGKNMYVVEVDDVIFILDAGLKYPETEMLGVDFVIPDMSYLVENAD
RVAGVFLTHGHPDAIGALPYLLSEMAVPVFGSQLTVELAKIRIKEVDGSKKFDDFHIVDE
STEIDFGAAVISFFSTTHTIPESLGIVVGTENGNVVYTGDFKFDPAVGEGYKTNISRLAE
IGTQGVLALLSDSANGLTNLQSASESEISDKIFDTISDWDGRVIIASVAGNLARIQQVID
SAIKLGRYVAFTGQDLDLIVKTASDLGKLRIDDDKMIIDPKDINKYEDKELLILETGRMG
EPLKTLTDMATGRHRFVKIKEGDLVYTVTSPTISYETKVAKTENIVYRAGGIMKMLSSDL
RVSGHANSRDLQFLLDILKPKNLMPIQGEYRELQTHAEHAMEVGMLPENIFLAKRGEVIT
FNAEGNFEPNGVVSAENVMIDGSGVGDIGNIVLRDRKVLSEEGIFIAVVTISKHEKKIIS
KTKVHTRGFVYVKNSRNLMKEAAIKVDEKVKAYLAGDNFDWAEIKSEIRDTLGKFLYDQT
KRRPVVLPVVMEVRQNDFRQKRHVKPKKKVEKVEKTEKID
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgtaaaaatagtagctttgggtggcgtccgcgaatttggtaaaaatatgtat
gttgttgaagttgacgatgtcatttttattttggatgctggtttaaaatatccagaaact
gaaatgttaggtgttgactttgttataccagatatgagctatctggttgaaaatgcggac
cgagtggcaggtgttttcttaacacatggtcatccagatgctattggtgccttgccttat
ttgttaagtgaaatggcagtacctgtctttggtagtcagctaacagtagaactggcaaaa
atccgtatcaaagaagtagacggtagcaaaaaatttgatgattttcatatcgtggacgag
tcaactgaaattgactttggtgctgcagtgatttcattcttttctacaacacatacgatt
cctgaaagtctagggattgttgtcggtacagaaaatggtaatgttgtctatacgggtgat
ttcaagtttgatccagcagttggtgaaggctataagacaaatatttcacgtttagctgaa
atcggcacgcaaggtgtcttagcacttttaagtgattcggcaaatggcttgacaaatcta
cagtctgctagtgaatctgaaatctctgataaaatttttgatacgatttcggattgggat
ggtcgtgtcatcatcgcctctgtagcaggtaatctagcgagaattcaacaagttatcgat
agtgccatcaaactaggtagatatgttgcctttactggccaagatttagatttgattgtt
aaaacagcaagtgatttaggtaaacttcgaattgatgacgataagatgattatcgatcca
aaagacatcaacaaatatgaagacaaagagcttttgattttggaaacaggtcgcatgggc
gagcctttgaaaacattgacagatatggcaactggccgtcatcgttttgttaaaatcaaa
gagggggatttggtctatacggtcacaagcccaacgatttcgtatgaaacaaaagtagct
aaaactgaaaatattgtctaccgtgctggtggtatcatgaagatgctatctagtgattta
agagtttctggacatgcgaattcacgtgatttgcagttcttattagatattttgaaacca
aaaaatctgatgccgattcaaggtgaatatcgtgaactacaaacacatgctgagcatgct
atggaagttggcatgttacctgagaatattttcttggcaaaacgtggtgaagtgatcact
tttaatgctgagggcaactttgaaccaaacggtgttgtatcagctgaaaatgtcatgatt
gatggctctggtgttggtgatattgggaatatcgtcttaagagaccgtaaagtactgagt
gaagaaggtatttttatcgctgttgtcaccatatctaagcacgagaaaaaaattatcagt
aagacaaaagtacacacacgtgggtttgtctatgttaaaaattctcgtaatttgatgaaa
gaagcagccattaaagttgatgaaaaagtaaaagcttatttagctggagacaactttgac
tgggctgaaattaagtctgagattcgtgatacactcggtaaattcttatatgaccaaacc
aaacgtcgtccggttgtcttgccagttgtgatggaagtacgtcaaaatgatttccgtcaa
aaacgtcatgttaaacctaagaaaaaagttgaaaaagtagaaaaaacagaaaaaatagat
taa
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