Pseudolactococcus piscium: LACPI_2036
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Entry
LACPI_2036 CDS
T03909
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpk
Pseudolactococcus piscium
Pathway
lpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACPI_2036 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpk03019
]
LACPI_2036 (dbpA)
03009 Ribosome biogenesis [BR:
lpk03009
]
LACPI_2036 (dbpA)
Enzymes [BR:
lpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LACPI_2036 (dbpA)
Messenger RNA biogenesis [BR:
lpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LACPI_2036 (dbpA)
Ribosome biogenesis [BR:
lpk03009
]
Prokaryotic type
rRNA helicases
LACPI_2036 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
AAA_19
UvrD-helicase
CMS1
Flavi_DEAD
ERCC3_RAD25_C
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
CEN29236
UniProt:
A0A0D6DZM9
LinkDB
All DBs
Position
I:complement(2135666..2137126)
Genome browser
AA seq
486 aa
AA seq
DB search
MKTFDTLNISQKTQQALTALGYTQPTEVQQAVISELTAGHDLLVKSQTGSGKTAAFAIPI
VETVVWEERRPQVLVLAPTRELASQISEEIFNVGRFKRIKVETLIGHSSFQAQVRNLKER
THVVVATPGRLLDHIAQGTIQLDLIKLVVLDEVDEMLSMGFMDQVDAIFEELPSKPQVAL
FSATLPKAVRDVADFYVKNPILVEVKATNAVSKRIDQTFYLVDKEDKLENLYQLLVMENP
DSAIIFANTRAAVDAISDYLQQKKVPNETLHGGMEQRDRTRVINDFKHNYFRYLIATDVA
ARGIDVADIAVVYNFDLPDNPDAYTHRIGRSARFEKTGQAISLVSAAQRSDFAKIEQVQA
GIDATITEMQLPSVSLFDKRLPSFIAKQNRELVLKTDKSTVFKDEIMKLHINAGKKTKLR
AGDVVGAITSIPGISGDDIGVIAIVEVSTFVEILNGNGSKVLKALQTEKIKGRVRKVSRA
NAGKYE
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgatacattaaatattagccaaaaaacacagcaggcactgactgctcta
ggatatacgcaaccaaccgaggtgcaacaagctgttatttcagaattgacagcggggcat
gacttgcttgttaagtcacagacgggtagtggcaaaacggccgcttttgccataccaatc
gttgaaacagtggtttgggaagaacgtcgccctcaggtattggtgcttgcaccaacacgt
gaacttgcctcgcaaataagtgaagaaatctttaatgttgggcgtttcaaacggatcaag
gttgaaacactaatcggccattcttcttttcaagcacaggttcgtaatttgaaagaacgg
acgcatgttgttgttgcgacaccgggtagattgttagatcatatcgcacaagggacgatt
cagttagacttaattaagcttgttgtgctcgatgaagtggatgagatgcttagcatgggc
tttatggatcaggttgatgccatatttgaagaactacctagtaaacctcaggtcgcctta
ttttcagcgactttaccaaaggcagttagagatgtcgccgatttctatgtaaaaaatcca
atcttggttgaggttaaggcgaccaatgccgtgtcaaaacgaattgaccaaaccttctat
ttagttgacaaggaagataagttagaaaatctataccagttattggtgatggaaaatcca
gactcggctattatttttgccaataccagagcggcagttgatgcgatttcagactactta
cagcagaaaaaagtgccaaatgaaaccttgcatggtggtatggagcaacgcgatcgaacg
cgtgtgattaatgattttaaacataattatttccgttatttgattgcgacagacgtcgca
gcgcgtggtatagatgttgcagatatagcggttgtctataattttgacctacctgataat
cctgatgcctatactcaccgtatcggaagatcggcgcgtttcgaaaaaacgggacaagcg
atttcattggttagtgcagcacaacgaagtgattttgctaaaattgagcaggttcaagcg
gggattgatgctactataacagagatgcagttaccaagcgttagtctgtttgataaacgt
ctgccttcgtttatcgcaaagcaaaatagagaactcgtcttgaaaacagataagagtact
gtctttaaagatgaaatcatgaagctccatatcaatgcgggtaagaaaacaaaattacga
gcaggtgatgtggtaggtgccattaccagtattcctggtattagtggtgatgatatcggt
gtgattgccatcgttgaagtatctacctttgttgagattctaaatggcaatggtagtaaa
gtattaaaagcgctccaaactgagaaaattaaaggtcgcgtacgcaaagtatctcgtgca
aatgccggaaaatatgagtaa
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