Lactiplantibacillus plantarum WCFS1: lp_0962
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Entry
lp_0962 CDS
T00115
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpl
Lactiplantibacillus plantarum WCFS1
Pathway
lpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lp_0962 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpl03019
]
lp_0962 (recQ1)
03400 DNA repair and recombination proteins [BR:
lpl03400
]
lp_0962 (recQ1)
Enzymes [BR:
lpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lp_0962 (recQ1)
Messenger RNA biogenesis [BR:
lpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lp_0962 (recQ1)
DNA repair and recombination proteins [BR:
lpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
lp_0962 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
CCC78396
UniProt:
F9UMF7
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All DBs
Position
893921..895729
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AA seq
602 aa
AA seq
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MIDLAAAQQVLKTTFGYDEFRPGQKAVIEQVLAGENTLAIMPTGGGKSLCYQIPALLFQG
LTVVVSPLISLMKDQVDALNDNGIAATFINSSLDFQEINERLQELRAGDYTLLYVAPERL
DSDYFIQALGRLPIQLLAIDEAHCISQWGHDFRPSYLALSTAIEQLPTHPQVLALTATAT
EQVAADICGRLAINPQHEVNTGFARDNLDLTVVKDQDTDRYILDYLKVNHGEAGIIYAST
RKEVMRLTSLLQKHDIKATPYHAGLDDAVRRQNQEDFLYDRVDVMVATNAFGMGIDKSNV
RFVIHAQVPGTLEAYYQEAGRAGRDGLPSEAILIFRPVDIQLQHFFIDESEMDTEHRHLA
YQKLQVMTRYANTQGCLQQFILKYFGEKSAPCGRCSNCTDQRESQDITTAAQQVLSCVVR
LHSRFGKGVVAQVLTGANNQRVRESNLNTLSTYGLMSGQRQKSVVELIDFLTASGYLQSV
GGQYPTLTVSASGVAVLKGTTTVHRKTAQKVQQTVPENSALFEQLRTLRRQLAEEQGVPP
FVIFSDRTLHSMCDLMPEDDAAFLTVKGVGASKLEKYGETFMATIRAAAHAESATSTDEE
TD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgattgacttagcggcggcacagcaagtattgaagaccacgttcggatatgatgaattc
cgaccggggcaaaaggcagtgattgaacaagtgttggccggtgaaaacaccctagcgatt
atgccaactgggggtggtaagtcattatgttaccaaatcccagcgttactttttcagggg
ctgaccgtcgttgtctcaccattgatttctttaatgaaagatcaggtagacgcgttaaat
gataatggtatcgcggcgacttttattaacagttcactggatttccaagagatcaacgaa
cggctccaagaactacgggcgggggattataccttactttacgtggcacccgagcggtta
gattcggattactttattcaagcgctgggccggttgcccatccaactgttagcaattgat
gaggcccactgtatttcacagtgggggcacgattttcgccccagttatttagcgctcagc
acggcgattgaacaattgccgacccatccgcaagtcctagctttaacggcgacggcaact
gagcaagttgctgcggatatttgcggccgcttagcgatcaatccacaacatgaagtgaat
actggttttgcccgcgataacttggatttgacggtggtcaaggaccaagacacggaccgt
tacattttagattatttgaaagttaatcatggtgaagccgggattatttacgccagcacc
cgtaaagaagtgatgcgtctgacgagtttgttgcaaaagcatgatattaaggccacgccg
taccacgctgggctagatgatgcggttcggcggcaaaaccaagaggatttcttgtacgac
cgtgttgacgtcatggtggcaaccaacgcgtttggaatgggtattgataagagtaacgtg
cgttttgtgattcacgcccaggtccccggaactttggaagcttattatcaggaagccggt
cgggctggccgggatgggttacctagtgaagcgattttgatttttcgaccggttgatatt
caacttcagcacttctttattgatgagtcggagatggatacggagcaccgacacctggcg
tatcagaagctacaggtgatgacacggtatgcgaacacccagggctgtttacaacagttt
atcttgaaatactttggtgaaaaatccgcgccgtgtggtcggtgtagtaattgtactgat
cagcgggaatcacaggatatcaccacggcagcccaacaagtcttatcgtgcgtcgttagg
cttcattcacggttcggtaaaggggtcgtggcccaggtattgacgggcgctaataatcaa
cgggtccgcgaatcgaacctcaatacattgtcgacgtacgggttgatgtccgggcagcga
cagaagagtgtcgtggaactgatcgattttttgactgcgagcggttatttgcagtcggtg
ggtggtcagtatccaacgctgacagtctcagcgagtggagtggccgtgcttaaaggaacg
accacggtacaccgaaagacggcccaaaaggtgcagcagacggtgccagagaacagtgcc
ctcttcgaacagttgcggacacttcggcgccaattggcggaagaacagggcgtaccacca
tttgtgattttttctgaccggacgcttcattcgatgtgtgaccttatgccagaagacgac
gcagctttcttaacggtcaaaggggtcggggccagcaaacttgaaaagtatggtgaaacc
tttatggcgacgattcgagcggcagctcatgcggaatcagcaactagcaccgatgaggaa
accgattag
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