Lactiplantibacillus plantarum WCFS1: lp_1418
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Entry
lp_1418 CDS
T00115
Name
(GenBank) metal-dependent phosphohydrolase, HD family
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
lpl
Lactiplantibacillus plantarum WCFS1
Brite
KEGG Orthology (KO) [BR:
lpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpl03019
]
lp_1418
Messenger RNA biogenesis [BR:
lpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lp_1418
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
CCC78757
UniProt:
F9UNG8
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Position
1299181..1300161
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AA seq
326 aa
AA seq
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MAKKLFDYQLDETVDGYFLLKDSEVRIAKNGKKFLAINFQDTSGEISGKFWDASDTDVEN
FQAGRIVHLKGKRENYQGNPQIKIQQMRLTHSGEPQEVQQFVEHAPLKTDTMADEINQFV
FEITEPNWNRIVRHMLTTFHDRFFSYPAAKKNHHAFAGGLAYHTLSILRLAKAVADQYPH
VNRALLYAGAILHDMGKTIEMSGPVSTTYTLAGNLVGHIVLIDEQIVETCQQLKIDEQSE
SVLVLRHTILAHHGLLEYGSPVRPHIMEAEILHDLDELDASIQMMQTSLGHAEPGTYTER
IFAMDGRNFYRPTGDQTKGELPDEQN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagttatttgattatcaattagatgaaaccgtggatggctattttttgttg
aaagattcggaagttcgcatcgccaagaacggcaagaagtttttagccattaattttcag
gatacttccggcgagatttccgggaagttttgggatgcaagcgatacagatgtcgaaaac
tttcaggcaggtcggatcgttcatctgaaaggtaaacgcgaaaactatcagggtaatccg
caaatcaaaattcaacaaatgcggctcactcatagtggcgaaccgcaagaagtgcaacaa
tttgtggaacacgcaccactaaagaccgacacgatggcggatgaaatcaatcagtttgtc
tttgaaattactgaacctaattggaatcgaattgttcgccacatgttaacgacatttcat
gaccggttctttagctatcccgcggcgaagaaaaatcatcacgcgttcgccggtggctta
gcctatcacacgttatcaattttgcgcttagctaaggcagttgctgatcagtatccccac
gttaaccgggccttactatacgccggtgcgattttgcacgacatgggtaagacgattgaa
atgtcggggccggtctcgacgacttatacgttggcagggaacttggtcggtcacattgtc
ctgatcgatgaacaaatcgtggagacttgtcaacagttgaaaattgacgagcagtcggaa
tctgttttagtcttgcggcatacgattcttgcgcaccatggtttgttagaatatgggtca
cccgttcggccccatattatggaagctgaaatcttacatgacttggacgagttggacgcg
tcgattcaaatgatgcagacttcacttggacatgcagagccgggcacgtatacggagcgg
atctttgctatggatggtcgtaacttttaccggccaactggtgatcaaacgaagggcgaa
ttaccagacgaacaaaactaa
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