Lactiplantibacillus plantarum WCFS1: lp_2300
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Entry
lp_2300 CDS
T00115
Name
(GenBank) metal dependent phosphohydrolase, HD family
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lpl
Lactiplantibacillus plantarum WCFS1
Pathway
lpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lp_2300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpl03019
]
lp_2300
Messenger RNA biogenesis [BR:
lpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lp_2300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
DUF7262
Motif
Other DBs
NCBI-ProteinID:
CCC79500
UniProt:
Q88UZ5
LinkDB
All DBs
Position
complement(2077165..2078724)
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AA seq
519 aa
AA seq
DB search
MNVFGIILAVIAIVVGYGIGYYVRKNVHEKELDVARNTAEGIISEAKRAAETHKKEKVLE
AKEESHRYRAEVETELKQRRNEVQKQEDRLLQREETLDHKENTFEKREDALGKKEDKIAN
EQKRVEQQQQSAASLITQRQAELERVAALSQEQARDQILTQTREQLTHERAVLIKENTDE
VKAQSEKEAKNLIVQAIQQSAADMVSETTVSVVSLPNDDMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVVLSGYDPIRREIAKIALEKLIQDGRIHPARIEEMVEKARKEMDEKIRE
TGEQAVFDLGLHGMHPDLIKLVGRLNYRTSYGQNVLNHSIEVAKLAGVLAAELGEDVTLA
KRAGLLHDIGKAVDHEVEGSHVEIGVELTTKYKESPVVINTIASHHGDVEAKSIIAVLVA
TSDSISAARPGARSESLENYIHRLEKLEAIANNEDGVKKSYAIQAGREIRVIVKPNEISD
LQATVLAHDVKKQIENELEYPGHIKVTVIREVRAVDYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttttcggtataatcctcgcagtcatcgcaattgttgtcggttatgggattggt
tactatgtacgcaagaacgtccatgaaaaagaattggacgttgccaggaacacagccgaa
ggtattatttctgaggccaaacgggcagcggagactcataagaaagaaaaagtccttgaa
gctaaggaagagagtcatcgctaccgggctgaagttgaaacggagttaaagcaacgtcgg
aatgaagttcaaaagcaagaagaccggttgcttcaacgtgaagaaactttagatcacaaa
gagaatacttttgaaaagcgcgaggatgctttaggtaaaaaagaagataagattgccaat
gagcaaaaacgcgttgaacaacagcaacaaagtgcagcttcactaatcacgcaacgtcaa
gctgagttagaacgggtcgccgccttgtcgcaagaacaagctcgcgatcagattttgacc
caaacgcgcgaacaattaacgcatgaacgggccgtgttaattaaagaaaatacggacgaa
gtgaaagcgcagtctgaaaaagaagccaaaaacttaattgtccaagcgattcagcaaagt
gctgccgatatggtttctgaaaccacggtttcggtcgtttctttgccgaatgacgacatg
aaaggccggattattggtcgggaaggtcgtaacatccgaacgttggaaacgctgacggga
attgatttaattattgatgacacgccagaagccgtcgttttaagtggttacgatccgatt
cgtcgtgaaatcgcaaagatcgcgcttgaaaagctgattcaagatgggcggattcatcca
gctcgaattgaagaaatggttgaaaaagcgcgtaaggaaatggacgaaaagatccgtgaa
actggtgaacaagctgtctttgatttaggattgcacgggatgcatcctgacttgatcaag
cttgttggtcggctgaattatcggaccagttatggtcaaaatgttttgaatcactcaatt
gaagttgcgaagttagcgggcgttttagccgctgaacttggtgaagatgttacactcgcg
aaacgcgcaggattattacacgatattggtaaggccgtcgatcatgaggtcgaaggttcc
cacgttgaaattggcgtggaattaacaacgaagtacaaagagagccccgtcgtgattaac
acgattgcctcccatcatggtgatgtggaagctaagtcgattatcgcggtgttggttgcg
acgtctgattcaatttcagccgcccggccaggtgctcggagtgagtcgctggagaattat
attcatcggctcgagaagctggaagcgatcgctaataatgaggatggcgtcaagaagagc
tatgcgattcaagctggtcgtgaaattcgagtcatcgttaagccaaacgagatttctgat
ttacaggcaacggttttggcgcacgatgtcaaaaagcagattgaaaatgaacttgaatat
cccggtcatattaaggttacggttattcgggaagttcgagcagtggattacgctaaataa
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