Legionella pneumophila subsp. pneumophila Thunder Bay: LP6_0314
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Entry
LP6_0314 CDS
T02689
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lpm
Legionella pneumophila subsp. pneumophila Thunder Bay
Pathway
lpm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LP6_0314 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpm03021
]
LP6_0314 (rpoB)
03400 DNA repair and recombination proteins [BR:
lpm03400
]
LP6_0314 (rpoB)
Enzymes [BR:
lpm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LP6_0314 (rpoB)
Transcription machinery [BR:
lpm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LP6_0314 (rpoB)
DNA repair and recombination proteins [BR:
lpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LP6_0314 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
DUF6497
Motif
Other DBs
NCBI-ProteinID:
AGN13236
LinkDB
All DBs
Position
365570..369676
Genome browser
AA seq
1368 aa
AA seq
DB search
MAVAEAKPQYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGL
HAAFSSVFPIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDA
SDDPKPIKDIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSS
GKLLYSARIIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFET
THCHLKNGEYHIDLIPQRLRGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDL
VVPRDYLIGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGS
YISDTLKIDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKF
NRRVGIKSDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFR
VGLVRVERAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVT
HKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYG
FIETPCRKVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLT
TPDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGME
RIVASDSGVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCI
NQRPIVSTGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHD
DRFTTIHIEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVG
KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARA
KSIEEEHLARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKV
EREKWFDIRIEDDAISQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKV
YLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQV
LETHLGLAAKGLGRKIAQMLDEKQTPEAIKAYLEKIYNHDGVQRVNLKCLNDDELMTLAD
NLRAGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLK
LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcagaagctaaacctcaatattcgcatgctgagaaaaaacgatttcgcaaa
agctttggtaagcagacagatataatgccaataccgaatctgcttgaaattcaacttaaa
tcctacagggattttcttcaaactgatactaaattaagcgaacaactgaatacgggattg
catgctgcattttcttctgtatttcctatcgaaagcttttctggcaatgcaagacttgaa
tacgtcggatacaagcttggagagcctgcatttgatgttcgcgaatgcaaactacgaggg
ctaacttactcagctcctctaagagtcaagatcagactcgttgtgcttgataaagatgca
agcgatgatcctaagcctataaaggatattagagagcaagatgtttttatgggggaaatt
cccctaatgaccgacgttggtacgtttgtggtcaatggaactgaacgtgttgttgtttca
caattacatcgttcgcctggagttatatttgaacatgacaagggaaaaactcactcttca
ggtaaattgctctattccgcacgaataataccttatcgtggttcatggttagattttgaa
ttcgatcctaaagattgcgtttatgtacgtattgacagacgtcgaaaactgccagtgacc
attttgctcagagcattgggctacgaagcagaagatatattaagcgaattttttgaaaca
actcattgtcatctaaaaaatggcgaataccatatcgatttaattccacagcgtttgcgt
ggtgaaatcgcctcattcgacattcatgttcctgagacaggagagcttatcgtagagcaa
ggtcgtcgaattactgcaagacatataaagcaaatggaaaaaagccaaatgcaggatctt
gtggtgccaagagactatttaattggaaaaacattagcaaaaaatattattgatacctca
accggtgaatttctggctcaagcgaatgatgagataacggaagagcttttagatgctatg
gctaaccatggtattttacaaattgatatgatctatactaatgatttggatcatggttct
tacatatcggatacattaaaaattgatcccacagggtcacaactagaagcgctcgttgaa
atttaccgcatgatgcgccctggagagcctcctacaaaagaagctgctgaggcactattc
aaaaatctattctttgttgaagaaagatatgatctatctgctgttggcagaatgaaattt
aatcgtcgcgtaggaattaagagtgacgaaggcccaggcactttaacgaaagaagatatt
ttatctgtcattaaaacactgatagatattcgaaacggtatagggatggttgatgatatc
gatcatctaggaaatcgtagggtaagaagtgttggcgaaatgaccgaaaatcagtttaga
gtaggtcttgttcgagttgaacgtgctgttaaagagcgcttaagtttggttgaatctgaa
aatctgatgccacaggacttaattaacgcaaaaccagtatccgccgcaattaaagagttt
tttggatccagtcagttatcacagtttatggatcaagtgaatccattatctggtgttacg
cataaaagacgtgtatcagctcttgggccaggtggtttaacacgtgagcgggctggattt
gaagtccgtgacgtacatacaacacactatggtcgtgtgtgtccaattgaaacgcctgaa
ggaccaaatattggtctaatcaattcactgtcagtttatgcaagaactaacgaatatgga
tttattgaaactccttgtcgaaaggtcgttaatgggcgtgtgacagatgaagttgaatac
ctatcggctattgaggaagttgatcaatacattgcacaatccaatgttgagttagacgca
caaggaaatattcttgctgacttagttccttgcagacatcaaaatgaattttcactgact
actccggataaaattaactacatggatgtctcgcccaagcaaattgtgtcagttgctgct
tcattgattccgtttttagagcacgatgacgcaaacagagcattaatgggttcaaacatg
caacgacaggctgtaccaaccttgcgttcagaaaagcccttggttgggaccggtatggaa
agaatcgttgcatctgattcaggagtctcagttgttgcgaagagaggtggagttattgat
ctagttgatgcttctcgtattgttgttcgagtgaatgacgatgaaacaacagcaggggaa
acaggggtagatatttataacttaaccaagtatttccgttctaaccaagatacttgtatc
aatcaaagaccgatagtatcaacaggtgatcgaattcaacgaggtgatgtcctggctgat
ggtccatgtacagatatgggtgaattggctcttggacagaatctactggtagcgtttatg
ccttggaatggttataactttgaggattccattcttatatctgaacgaatcgttcatgac
gacagattcactactattcacatcgaagagttaacatgtatagctcgagataccaaatta
ggtacagaagaaattacagcagatattcccaatgtaggcgagtctgcactctccaatttg
gatgaatctggagttgtttacataggtgcagaagttaaagcaggtgatattcttgtgggg
aaagtaactcctaaaggagaaacccaactaactccagaagaaaaactgttaagagctatc
tttggtgaaaaagcttcagatgttaaagattcatctttgagagttccatcaggtatgaat
ggaacagtgatcgatgtacaagtctttacccgtgatggacttgaaaaggatgcccgtgct
aaaagcattgaagaagagcatctagctcgagttcgcaaggatttaatagacgaacggcgt
attcgtgaagaagatatctatcatagagtttctcatttgctgttggataaggtggcaaca
ggcggtcctggaagcctaaagcctggatctaaaatcacccaggattacctagacaaagtt
gaaagagaaaagtggtttgatattcgtatagaagatgacgcaattagtcagcaacttgaa
caattatccaagcaactggaacttttaacaaaagaaatggaaaagcgctttaatgacagt
agaaagaaaattatccagggagacgatttagctcctggtgtattaaaaattgttaaagtg
tatttggctgttaaaagaagaattcagcctggagataaaatggcaggtcgtcatggaaac
aagggtgtgatctccattgttgttccagttgaagatatgccacatatggaagatggaacg
gctgtagatatcgttcttaatccattgggcgtaccatcgcgaatgaatattggccaggtt
cttgaaacgcatctgggactagctgccaaaggattaggaagaaagattgcacagatgctt
gatgaaaagcaaacacctgaagcaataaaagcataccttgagaaaatttataatcatgac
ggagtgcagcgtgttaatttgaaatgcctcaatgatgatgaattaatgacactggcggat
aacctgagagctggtgtgccgatggcaacccccgtctttgatggtgctactgagcaagaa
atcaaaagtatgttgcagttagcagatttgccagcagatggtaagaccgtgttgatagat
ggccgaacaggtaataaatttgataatccggttactgtaggctacatgtatatgttgaag
ttaaaccatttggttgatgacaagatgcatgctcgttcaactggatcatacagtttggtc
actcaacagccacttggcggtaaagcacagtttggtggtcagcgttttggtgagatggaa
gtatgggcattagaagcatatggtgcagcatacactttacaagaaatgttaaccgtaaaa
tcagatgacgtcggaggtcgaacaaagatctataaaaatatagtcgatggagatcatcgt
atggacccaggaatgcctgaatccttcaatgtattattgaaggaaattagagcactggga
attgatatcgagttggagcatgactaa
DBGET
integrated database retrieval system
