Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1): lpg0323
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Entry
lpg0323 CDS
T00199
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpn
Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1)
Pathway
lpn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
lpg0323 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpn03021
]
lpg0323 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpn03400
]
lpg0323 (rpoC)
Enzymes [BR:
lpn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
lpg0323 (rpoC)
Transcription machinery [BR:
lpn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
lpg0323 (rpoC)
DNA repair and recombination proteins [BR:
lpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
lpg0323 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AAU26420
Pasteur:
lpg0323
UniProt:
Q5ZYP9
LinkDB
All DBs
Position
374308..378555
Genome browser
AA seq
1415 aa
AA seq
DB search
MATLSNDPMKKAPVMSDLLGILKQQGQSEEFDAIKIALASPELIRSWSYGEVKKPETINY
RTFKPERDGLFCAKTFGPVKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIE
LASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTELERGQLLNDEAYL
DAMEQYGDEFDARMGAEAIRDLLRQIDLEDEIRNLREELPTTNSETKIKKITKRLKLLEA
FYESGNKPEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLN
APDIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKR
VDYSGRSVIVVGPTLKLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREES
VVWDILDDVIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQM
AVHVPLTLEAQLEARSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTREKVNALGEGKI
YSSAQEAQNFYEAGHLDIHAKIKIRMPKEDGETGYHLVETTVGRAILAEILPKGMPFDYI
NRTMTKKVISKVIDSCYRKFGLKETVIFADQLMYTGFKYATRSGASIGIEDMEIPDDKAS
IIEHADNEVREIESQFRSGLVTNGERYNKVIDIWSRTNELVAKSMMSKIATEEVTDAKGN
KVRQESFNPIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQY
FISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILMQPLIEGGDIV
EPLHERVLGRVVASDVYIPTQTEPVVKAGTLLDEEWVEKLEKHGVDQVMVRSPITCQTRF
GLCAKCYGRDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQI
KTKGVIRLHNIKTVTHENKNLVAVSRSGEVTIVDEFGRERERYKVPYGAVISAQDNSPVE
AGQVIATWDPHTHPVISEVSGRLKFVDLIDGITMNRQTDELTGLSNIVIIDAKQRSAAGR
DLRPMVKLVTDEGDDIYLAGTNVPAQYYLPVDAIVNFEDGSLVGIGDVIARIPQERSKTR
DITGGLPRVADLFEARKPKDSAVMAEVSGLVNFGKETKGKRRLIINVSEDQCHEELIPKW
RHISVFEGEHVERGEIIAEGALNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHI
EVIVRQMLRKRVITFAGDSKFLVGEQVEESAMLQENDKLLAEGKQIARGTPILLGITKAS
LATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVGRLIPAGTGYTYHQSRKAKR
ARVAAGGDSSATHTVTASDVEHALSEALNADNHEH
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
ttggctaccctaagcaacgacccaatgaaaaaagcaccagtaatgagtgacttacttggt
attcttaagcaacaaggtcaaagtgaagaatttgatgcaataaaaattgcactggcgtca
cctgaattaattcgatcatggtcctacggcgaagttaaaaaacctgaaacaatcaactac
aggacatttaagcctgaaagagatggtttgttttgtgctaaaacttttggtccagttaaa
gattatgagtgtttgtgtggaaagtacaagcgactaaagcatcgtggtgttatttgcgag
aagtgtggggttgaattggctcttgccaaagtgagacgagaaagaatggggcatatcgaa
ctcgctagcccagtcgctcacatatggttcttaaaatccttaccatcaagaattggtttg
ctcctcgatatgacactaagagatatcgaaagagtactctattttgaagcttttgtcgtt
gttgatcctggaatgacagaacttgaaagagggcaactacttaacgacgaagcctatctt
gatgcgatggaacagtatggtgatgagtttgacgcgcgtatgggcgcagaagcaattcgt
gatttattgcgccaaattgatctggaagatgaaattagaaatttacgtgaagagcttcca
acaactaactctgagacgaagattaaaaaaatcaccaaaagactcaagttattagaagct
ttttacgagtcaggaaataaaccagaatggatgatcatggatgtacttccagtgcttcca
cccgatttgaggccattggttccgctagatggtggacgttttgctacttcagacttgaat
gatttatacaggcgcgtcattaataggaacaaccgactaaaacgcctgctggatctaaat
gcgccagacattatcgttcgtaacgaaaaacgaatgctgcaagaatccgtagatgcttta
cttgataacggcagaagaggtcgtgccatcactggtacaaataagagacctcttaaatca
ctggcagatatgattaaaggtaaacagggtcgtttcaggcaaaacctcttaggtaagcgt
gtcgactactctggacgttcagttattgtagttggaccaactttaaaattgcaccaatgc
ggattgcctaaaaaaatggcgttggagttattcaagccatttatattttccaaattggaa
tttagaggtttggcaactactatcaaagcggccaagaaaatggtcgaaagagaagaatcg
gtggtttgggatatattagatgatgttattagagaacatcctatccttttaaaccgtgct
cctaccttgcatagattaggtattcaagcatttgagcctgttttaattgaaggtaaagcg
atccagctccatcctttggtatgtacagcatacaacgctgacttcgatggagaccaaatg
gctgtgcacgtgcccttgacactggaagcgcagctggaagctcgttcattgatgatgtct
acaaacaatatattatctccagccagtggtgagccaattattgttcccagtcaggacgtc
gtccttgggctatactatttaacacgagaaaaggttaatgcattaggcgaaggaaaaata
tattcaagtgctcaggaagcgcaaaatttctatgaagcaggtcatttggatatccatgca
aaaattaaaattcgtatgcctaaagaagatggtgaaactggatatcatttggttgagaca
acagtcggacgcgctattttagctgagattttgcctaaaggaatgccatttgactatata
aaccgtacaatgacaaaaaaggttatctcaaaagtaatagacagctgttaccgtaaattc
ggcttgaaagaaacagtcatttttgctgatcagttaatgtataccgggtttaaatacgcc
acacgatctggagcatccataggtattgaagacatggaaataccagatgataaggccagt
attattgaacacgccgataatgaagtaagagaaatcgagtctcaattcagatcaggtctg
gtaacgaatggtgaacgatacaacaaggtaattgatatttggtcaagaactaatgaatta
gttgccaaatcaatgatgtctaaaattgcaacagaagaagtcactgatgcaaaaggcaac
aaagtaagacaagaatcatttaacccaattttcatgatggctgattctggagctagaggt
tctgctgctcagatacgacagcttgccgggatgcgaggtttgatggcagctccagatggc
tcaatcattgaaacgcctatcactgcaaacttccgcgaaggtttgaatgtattccagtac
tttatttctacacacggagctcgtaagggtttggcagatacggcgttaaagacagcaaac
tcagggtatctgacacgacgcttggtagatgttgcgcaggatgttgttattaccgaagat
gattgtggtactgatacaggtattctaatgcaaccactgattgaaggtggtgatattgtt
gagcctttgcatgaacgcgtccttgggcgggtggttgcttcagatgtctatattcctact
caaactgaaccagtagtcaaggctggaactttactggatgaagaatgggttgaaaaatta
gagaagcatggggtagaccaggttatggtcaggtcaccaatcacttgtcaaacaagattt
ggtctttgcgcaaaatgctatggtagagatcttgctcgtgggcatcttgtcaacacaggt
gaagcagttggtattatcgcagcacaatcaatcggtgagccaggaacacagttaaccatg
cgtaccttccacattggaggtgctgcatcaagggcaacagctgcgaataatattcaaatt
aaaacgaaaggggttattcggttacataatataaagaccgtaactcatgagaataaaaac
ctggtggcagtttctcgctcaggtgaggtaactattgttgatgagttcggacgagaaaga
gagcgatataaagttccttatggtgcagtaatttcagcacaggataattctcctgttgaa
gctggtcaggttattgcaacgtgggatccccatacgcatcctgttatttccgaagtgtca
gggcgtttaaagtttgttgatctcattgatggcattacaatgaatagacaaactgatgaa
ttaactggattaagcaatattgtaataattgatgccaagcaacggagtgcagcaggtcga
gatttgcgcccaatggtaaaattagttacagatgaaggggatgacatatatcttgctgga
accaatgtcccggcacaatattatctacctgtcgatgccattgtgaactttgaagatgga
agtctggtgggaataggagacgttattgcccgtattccgcaggaacgttctaaaacccga
gatattaccggaggtttgcccagagtagcggacttatttgaagccagaaaaccaaaggat
tctgcagtaatggcagaagtatcaggattggttaattttggtaaagaaaccaaaggtaag
cgacgcttgattatcaatgtatcggaagatcaatgtcatgaagagcttattcctaaatgg
cgtcatatttcagtgtttgaaggcgagcacgtagagcgtggtgaaatcatcgcagagggt
gcacttaaccctcatgatatattgcgcttgttaggtgttggagcgctggctaattacatt
gtaaatgaggtccaggacgtctatcgtttacaaggtgtgaaaattaatgataaacacatt
gaagtaattgtcagacaaatgctacgtaagagagttattactttcgctggtgactcaaaa
ttcctcgtaggagagcaagtagaagagagtgctatgcttcaggaaaatgataaacttctg
gctgaaggaaagcagattgcgcgaggtactcctattttactaggtatcacaaaagcttca
ttagctacagaatcgtttatatcagccgcttcattccaagagacaaccagagtcttgact
gaagcagcagtaagcggaaaagttgatgaattgcgtggtttaaaagaaaacgtgatggta
ggtcgcctaattccagcaggaacaggttatacttatcatcaaagccgaaaggcaaaaaga
gcaagggttgcagcaggcggagacagttcagcaacacacacagttactgcaagtgatgtt
gaacacgcgttgagtgaagcattaaacgcggataatcatgaacattaa
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integrated database retrieval system
