Leclercia pneumoniae: KQ929_02640
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Entry
KQ929_02640 CDS
T08189
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lpnu
Leclercia pneumoniae
Pathway
lpnu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lpnu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KQ929_02640 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpnu03021
]
KQ929_02640 (rpoD)
Transcription machinery [BR:
lpnu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KQ929_02640 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QWW80179
UniProt:
A0ABX8K050
LinkDB
All DBs
Position
complement(532225..534069)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEDDDDSSDDDNSIDPELAREKFGELRTQYELARDTIKAKG
RSHAAAQEQILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKEDVHRGLMKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtccaacgcggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagacatcatccaaatgatcaatgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgttgctggctgaaaactccaacaacactgatgaagatgctgaagaa
gccgctgcacaggtactgtccagcgtagaatctgaaatcggacgcacgaccgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttgacccgcgaaggcgaaatcgac
atcgcaaaacgcattgaagacgggatcaaccaggttcagtgctccgttgccgaatacccg
gaagccatcacctatctgcttgagcagtacgatcgcgttgaagcggaagaagcgcgtctg
tccgatcttatcaccggcttcgtcgatccaaacgctgaagaagatatggcgccgaccgcc
acccacgttggatctgaactgtctcaggaagagatggatgacgacgaagacgaagatgaa
gaagacgacgacgacagcagcgatgacgacaacagcatcgaccctgagctggcgcgcgag
aagtttggtgaattgcgtacccagtacgaactggctcgcgacacgatcaaagccaaaggc
cgcagccatgctgccgctcaggaacagatcctgaagctgtctgaagtgttcaaacagttc
cgtctggtgccaaaacagttcgactacctggttaacagcatgcgcgtgatgatggatcgc
gtacgcacccaggaacgcatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaag
aagaacttcatcaccctcttcaccggtaacgaaaccagcgaaacctggttcaacgccgct
atcgcgatgaacaagccgtggtctgaaaaactgcacgacgtgaaagaagacgtgcatcgc
ggcctgatgaaactgcagcagattgaagaagagaccggcctgaccatcgaacaggtgaaa
gatatcaaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatg
gttgaagcaaacttgcgtctggttatctctatcgccaagaagtacaccaaccgtggtctg
cagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagataagttt
gaataccgtcgtggttacaagttctccacttacgcaacctggtggatccgtcaggcaatt
acccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagacc
attaacaagctcaaccgtatttctcgccagatgctgcaggagatgggtcgcgagccgacg
ccagaagagctggccgagcgtatgctgatgccggaagataagatccgtaaagtgctgaag
atcgccaaagagcctatctccatggaaacaccgatcggtgatgatgaagattcgcatctg
ggtgatttcatcgaggataccaccctcgagctgccgctggactctgccaccaccgagagc
ctgcgtgccgcaacgcacgacgtactggctggcctgaccgcccgtgaagcgaaagtgctg
cgtatgcgcttcggtatcgatatgaacaccgaccatacgctggaagaagtgggtaaacag
ttcgacgtaacccgcgaacgtatccgtcagatcgaagcgaaagcgctgcgtaaactgcgc
catccgagccgctctgaagtgctgcgtagcttcctggacgactaa
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