Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1): LPO_0373
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Entry
LPO_0373 CDS
T02175
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpo
Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1)
Pathway
lpo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPO_0373 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpo03021
]
LPO_0373 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpo03400
]
LPO_0373 (rpoC)
Enzymes [BR:
lpo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPO_0373 (rpoC)
Transcription machinery [BR:
lpo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPO_0373 (rpoC)
DNA repair and recombination proteins [BR:
lpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPO_0373 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CCD04483
UniProt:
A0AAV2UTK4
LinkDB
All DBs
Position
397678..401925
Genome browser
AA seq
1415 aa
AA seq
DB search
MATLSNDPMKKAPVMSDLLGILKQQGQSEEFDAIKIALASPELIRSWSYGEVKKPETINY
RTFKPERDGLFCAKTFGPVKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIE
LASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTELERGQLLNDEAYL
DAMEQYGDEFDARMGAEAIRDLLRQIDLEDEIRNLREELPTTNSETKIKKITKRLKLLEA
FYESGNKPEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLN
APDIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKR
VDYSGRSVIVVGPTLKLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREES
VVWDILDDVIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQM
AVHVPLTLEAQLEARSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTREKVNALGEGKI
YSSAQEAQNFYEAGHLDIHAKIKIRMPKEDGETGYHLVETTVGRAILAEILPKGMPFDYI
NRTMTKKVISKVIDSCYRKFGLKETVIFADQLMYTGFKYATRSGASIGIEDMEIPDDKAS
IIEHADNEVREIESQFRSGLVTNGERYNKVIDIWSRTNELVAKSMMSKIATEEVTDAKGN
KVRQESFNPIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQY
FISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILMQPLIEGGDIV
EPLHERVLGRVVASDVYIPTQTEPVVKAGTLLDEEWVEKLEKHGVDQVMVRSPITCQTRF
GLCAKCYGRDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQI
KTKGVIRLHNIKTVTHENKNLVAVSRSGEVTIVDEFGRERERYKVPYGAVISAQDNSPVE
AGQVIATWDPHTHPVISEVSGRLKFVDLIDGITMNRQTDELTGLSNIVIIDAKQRSAAGR
DLRPMVKLVTDEGDDIYLAGTNVPAQYYLPVDAIVNFEDGSLVGIGDVIARIPQERSKTR
DITGGLPRVADLFEARKPKDSAVMAEVSGLVNFGKETKGKRRLIINVSEDQCHEELIPKW
RHISVFEGEHVERGEIIAEGALNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHI
EVIVRQMLRKRVITFAGDSKFLVGEQVEESAMLQENDKLLAEGKQIARGTPILLGITKAS
LATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVGRLIPAGTGYTYHQSRKAKR
ARVAAGGDSSATHTVTASDVEHALSEALNADNHEH
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
ttggctaccctaagcaacgacccaatgaaaaaagcaccagtaatgagtgatttacttggt
attcttaagcaacaaggtcaaagtgaagaatttgatgcaataaaaattgcactggcgtca
cctgaattaattcgatcatggtcctacggcgaagttaaaaaacctgaaacaatcaactac
aggacatttaagcctgaaagagatggtttgttttgcgctaaaacttttggtccagttaaa
gattatgagtgtttgtgtggaaagtacaagcgactaaagcatcgtggtgttatttgcgag
aagtgtggggttgaattggctcttgccaaagtgagacgagaaaggatggggcatatcgaa
ctcgctagcccagtcgctcacatatggttcttaaaatccttaccatcaagaattggtttg
ctcctcgatatgacactaagagatatcgagagagtactctattttgaagcttttgtcgtt
gttgatcctggaatgacagaacttgaaagagggcaactacttaacgacgaagcctatctt
gatgcgatggaacagtatggagatgagtttgacgcgcgtatgggcgcagaagcaattcgt
gatttattgcgccaaattgatctggaagatgaaattagaaatttacgtgaagagcttcca
acaactaactctgagacgaagattaaaaaaatcaccaaaagactcaagttattagaagct
ttttacgagtcaggaaataaaccagaatggatgatcatggatgtacttccagtgcttcca
cccgatttgagaccattggttccgctagatggtggacgttttgctacttcagacttgaat
gatttatacaggcgcgtcattaataggaacaaccgactaaagcgcctgctggatctgaat
gcgcctgacattatcgttcgtaacgaaaaacgaatgctgcaagaatccgtagatgcttta
cttgataacggcagaaggggtcgtgccatcactggtacaaataagagacctcttaaatca
ctggctgatatgattaaaggtaaacagggtcgtttcaggcaaaaccttttaggtaagcgt
gtcgactactctggacgttcagttattgtagttggaccaactttaaaattgcaccaatgc
ggattgcctaaaaaaatggcgttggaattattcaagccatttatattttccaagttggaa
tttagaggtttggcaactactatcaaagcagccaagaaaatggtcgaaagagaagaatcg
gtggtttgggatatattagatgatgttattagagagcatcctatccttttaaaccgtgct
cctaccttgcatagattgggtattcaagcatttgagcctgttttaattgaaggtaaagcg
atccagctccatcctttggtatgtacagcatacaacgctgacttcgatggagaccaaatg
gctgtgcacgtgcccttgacactggaagcgcagctggaagctcgttcattgatgatgtct
acaaacaatatattatctccagccagtggtgagccaattattgttcccagtcaggacgtc
gtccttgggttatactatttaacacgagaaaaggttaatgcattaggcgaaggaaaaata
tattcaagtgctcaggaagcgcaaaatttctatgaagcaggtcatttggatatccatgca
aaaataaaaattcgtatgcctaaagaagatggtgaaactggatatcatttagttgagaca
acagtcggccgcgccattttagctgagattttgcctaaaggaatgccatttgactatata
aaccgtacaatgacaaaaaaggttatctcaaaagtaatagacagctgttaccgcaaattc
ggcttgaaagaaacagtcatttttgctgatcagctaatgtataccgggtttaaatacgcc
acacgatctggagcatctataggtattgaagacatggaaataccagatgataaggccagt
attattgaacacgccgataatgaagtaagagaaatcgaatctcaattcagatcgggtttg
gtaacgaatggtgaacgatacaacaaggtaattgatatctggtcaagaactaatgaatta
gttgccaaatcaatgatgtctaaaattgcaacagaagaagtcactgatgcaaaaggcaac
aaagtaagacaagaatcatttaacccaattttcatgatggctgattctggagctagaggt
tctgctgctcagatacgacagcttgccgggatgcgaggtttgatggcagctccagatggc
tcaatcattgaaacgccaatcactgcaaacttccgcgaaggtttgaatgtattccagtac
tttatttctacacacggagctcgtaagggtttggcagatacggcgttaaagacagcaaac
tcagggtatctgacacgacgcttggtagatgttgcgcaggatgttgttattaccgaagat
gattgtggtactgatactggtattctaatgcaaccactgattgaaggtggtgatattgtt
gagcctttgcatgaacgcgtccttggacgggtggttgcttcagatgtctatattcctact
caaactgaaccagtagtcaaggctggaactttactggatgaagaatgggttgaaaaatta
gagaagcatggggtagaccaggttatggtcaggtcaccaatcacttgtcaaacaagattt
ggtctttgcgcaaaatgctatggtagagatcttgctcgtgggcatcttgtcaacacaggt
gaagcagtgggtattatcgcagcacaatcaatcggtgagccaggaacacagttaaccatg
cgtaccttccacattggaggtgctgcatcaagggcaacagctgcgaataatattcaaatt
aaaacgaaaggggttattcggttacataatataaagaccgtaactcatgagaataaaaac
ttggtggcagtttctcgctcaggtgaggtaactattgttgatgagttcggacgagaaaga
gagcgatataaagttccttatggtgcagtaatttcagcacaggataattctcctgttgaa
gctggtcaggttattgcaacatgggatcctcatacgcatcctgttatttccgaagtgtca
gggcgtttgaagtttgttgacctcattgatggcattacaatgaataggcaaactgatgaa
ttaaccggattaagcaatattgtaataattgatgccaaacaacggagtgctgcaggtcga
gatttgcgcccaatggtaaaattagttacagatgaaggggatgacatatatcttgcggga
accaatgttccggcacaatattatctacctgtcgatgccattgtgaactttgaagatgga
agtctggtgggaataggagatgttattgcccgtattccgcaagaacgttctaaaactcgt
gatattaccggaggtttgccaagagtagcggacttatttgaagccagaaaaccaaaggat
tctgcagtaatggcagaagtatcaggattggttaattttggtaaagaaaccaaaggtaag
cgacgcttgattatcaacgtatcggaagatcaatgtcatgaagagcttattcctaaatgg
cgtcatatttcagtgtttgaaggcgagcacgtagagcgtggtgaaatcatcgcagagggt
gcacttaaccctcatgatatattgcgcttgttaggtgttggagcgctggctaattacatt
gtaaatgaggttcaggacgtctatcgtttacaaggtgtgaaaattaatgataaacacatt
gaagtaattgtcagacaaatgctacgtaagagagttattactttcgctggtgactcaaaa
ttcctcgtaggagagcaagtagaagagagtgctatgcttcaggaaaatgataaacttctg
gctgaaggaaagcagattgcgcgaggtactcctattttactaggtatcacaaaagcttca
ttagctacagaatcgtttatatcagccgcttcattccaagagacaaccagagtcttgact
gaagcagcagtaagcggaaaagttgatgaattgcgtggtttaaaagaaaacgtgatggta
ggtcgcctaattccagcaggaacaggttatacttatcatcaaagccgaaaggcaaaaaga
gcaagggttgcagcaggcggagacagttcagcaacacacacagttactgcaagtgatgtt
gaacacgcgttgagtgaagcattaaacgcggataatcatgaacattaa
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