Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1): LPO_1038
Help
Entry
LPO_1038 CDS
T02175
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpo
Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1)
Pathway
lpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPO_1038 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpo03400
]
LPO_1038 (mfd)
Enzymes [BR:
lpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPO_1038 (mfd)
DNA repair and recombination proteins [BR:
lpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPO_1038 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCD05107
UniProt:
A0AAV2UY22
LinkDB
All DBs
Position
complement(1066016..1069477)
Genome browser
AA seq
1153 aa
AA seq
DB search
MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFF
LNPNQNTQELLFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRL
SPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAREFPLNEQSQLHFRRAFRESFPG
NPSHCPIYEAISNNQFPSGIEYYLPLFFDKTVTFFDYLPANAKICLIEEIQENAERFWRE
LNERYEQRRHDVSRPILPPDNCFINPTELLTKANHYEQVRLYHKPSEKKGTLNFNIAKAP
QLPIDRKNIEPLRQLSEYCSDPTQRYLIVVESAGRREVLLDLLKSSHIIPKTQNSWLDFI
FDESPINITTGPLIYGCELTDKQIVIIVESQLFGEQSTPQRRSTQKSVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAYAGDDKIYVPVTSLHMISRYTGVDS
EHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGF
PFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP
TTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALHSGKVDIVIGTHKLFQNN
ISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAK
IQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQK
ISASAQQGKLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTSAEERIFEISS
LLNKLSPHSQTID
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacgctactttaccaacccacaaaaaataaacaaatatgggggcaactc
tatggtagcagtctggcacttgctttagctgaatattgccaacaaacacccgggatcaaa
ttacttattacgcaagacaacctatgcgccagtcagttgcaggatgaactacaatttttt
ctaaacccgaaccaaaatacccaggagttgttattttttcccgactgggaaactttgcct
tatgatcaattctctcctcatcaagatattatttcagaaagactctacaccttaagcaga
gttcaacaaattaccaatggaatcatcatttcttcagccagcactttaatgcacaggctt
tctccgccagagtttttaaatcaatacgctttaatgcttaaagaggggcaaaagcttgat
ctgaactcgttcaggaatcagttgcaacaagctggataccattgtgttaataaagtgctt
gaacatggtgaatacgcactacgtggatctattattgacgtatatccgatgggtagtggt
ttacctttccgtatcgagctatttgatgatgaaattgaaagtctcagagaatttgatccg
gaaacacaacgcacaatagaaaaaatcaatcaaatccatttgttacctgctcgtgaattt
ccattaaatgaacaaagccaattacacttccgacgagctttcagagagtcttttcctgga
aatcccagccattgcccaatatacgaagcaattagtaacaatcaatttccatctggcata
gaatattatctgcccttgttttttgataaaaccgttaccttttttgattatctgccagcc
aatgccaaaatttgtttaattgaagaaatccaggagaatgctgagagattctggcgggaa
ttaaatgaacgctatgaacaacggcgtcatgatgtcagccgccctattttacccccggat
aattgctttattaatcccaccgagttattaactaaagcaaaccattatgaacaagtacgc
ctgtatcacaaaccttccgaaaaaaaaggaaccttaaatttcaatattgccaaagctcca
caactacccattgacaggaaaaatattgagccactccgccaattaagtgagtattgttct
gatccaactcaacgctatcttattgttgttgaaagcgcagggcgtcgcgaagtgttactg
gatctgcttaaatcaagtcatatcattccaaaaacacagaactcatggttagacttcatt
ttcgatgaatcccccatcaatataactactggcccattgatttatggctgtgaattaact
gacaaacaaattgtgattatcgttgagtcgcaattatttggtgagcaaagcacacctcaa
cgccgaagcactcaaaaatcagttgaccctgacttaatcatacgagatatggccgaactt
cgattgggcgcccctgttgtacatcttcaatttggagtaggtcgctatcaaggtttgcaa
tacatcgactccaatggtacccccagtgagttcctcgtccttgcttacgcaggggatgac
aaaatctatgtgccagtcacttctctgcatatgataagccggtatactggtgtggacagt
gaacacgcccctttgcataaactgggttctgatcaatggcaaaaggaaaaaaagaaagcg
gccgagaagattcatgatgttgcaattgaattattggatctctatgctaaaagagaagcc
cagccagggcaccaatacgatttcaatcaatccgaatatataaaatttgccagtggcttt
ccctttacagaaacaccagatcaacttcaggctattgaacaaattattaaggacatgcaa
tcaccaagaccgatggatcgactaatctgtggtgatgtaggatttggcaaaacagaagtc
gccatgcgtgctgcattcgtagcggtacaaaatggaaaacaagtctgtatccttgctcca
actaccttgcttgcaggacaacattttgagtcatttcgcgatagatttgcagagtttcct
gttaatattgaattattatcccgctttcgcagtaataaagagtccgaagcagtccttgcc
gcattgcactcaggtaaagtagatattgtaattggaacccataaattattccaaaataat
atttctttcaaaaacctgggattactgattattgatgaagaacatcgatttggagtgaaa
caaaaggaacatattaaatcgcttcgtactcatgttgatattttatccatgactgctact
ccaattcccagaacattgaacatggcaatggcgggaatcagagatatttcacttattgca
acaccgcccgccaagcgtttggcaattaaaacattttggcaagaaaaaaatgatctcacc
atacgagaagcgatattgcgtgaaatattaaggggagggcaagtattttacctgcacaac
aatgtacaaactatagaaagagtttgccaggatctggaagctttagtacccgaagcaaaa
attcaaagcgcacatgggcaaatgcgagaaaggcaattagagcgcatcatgtctgatttt
tatcatcaccgatttaatgtcctggtttgcacaaccatcattgaaacagggatcgatatt
ccaactgccaataccattattatcgatcgtgccgataaatttgggttagcccagctgcat
caattacgtggtcgtgttggacgctcccatcatcaggcctacgcttacttattaactccc
aatgaaaaactgttaacgccagatgcagtgaaacgtctcgaagccattgtgtctttagaa
gatttgggagcaggattcaccttggcaacacacgatctggaaattcgtggagcaggtgaa
ctccttggcgaagaacaaagtggtaatatgcatgccataggatttaatttatttatggaa
atgcttgaccgtgccgttaacgatttaaaggcaggcaaaactcctgaattgtcagcaccc
atgcatcaaggacctgaaattgacttgagaattagcgcgattatccccgaagattacata
ggtgatatacacaatagactcatcatgtataaaagaattgctaatgcaaaaactacccaa
caacttagagaactacaaatagaactgatagaccggtttggtttactcccgcaaccagtc
aaacatctgtttttgattaccgaattaaagttaaaagcggaacagctcggtattcaaaaa
atcagtgccagtgctcaacaaggtaaattggattttagtgaaaaaccatcaattgaccct
ggaacactgattagcttaatacaagtacatgccaaacgctatcaaatggaaggaccgcaa
cgtctgcgctttactttagacagcacgtcagcagaggaacgaatatttgaaatcagttct
ttattaaataaactgtctcctcattcccaaacaattgactga
DBGET
integrated database retrieval system
