Limulus polyphemus (Atlantic horseshoe crab): 106460767
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Entry
106460767 CDS
T08968
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03013
Nucleocytoplasmic transport
lpol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106460767
03015 mRNA surveillance pathway
106460767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106460767
Enzymes [BR:
lpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106460767
5.6.2.5 RNA 5'-3' helicase
106460767
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106460767
mRNA cycle factors
Common to processing body (P body) and stress granule
106460767
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
NAT10_TcmA_helicase
nSTAND3
DEAD
AAA_16
ATPase
SRP54
Motif
Other DBs
NCBI-GeneID:
106460767
NCBI-ProteinID:
XP_013775956
UniProt:
A0ABM1B6T0
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEVTELLGADTQGSEFDFTDFTLPSQTQTSQLEHPQNHIRSQ
LNGPEVPLQNGLARDVATATQGFGELTFEEDEEDQYYAKDLPDHACKYCGIHDPGCVVQC
NVCKRWFCNGRGNTSGSHVINHLVRAKHKEVTLHKDGPLGETVLECYSCGCRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDPEQWKPLINDRTFLTWLVKVPQEQEQLRARQI
TAQQINKLEELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADYD
KKLKESQTQDNIEVRWDIGLNKKIIAYFTIAKSDTDMRLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFAVDETCV
SAYIYHKLLGHEVEDVILRCQLPKHFSAPNLPELNRSQVYAVKHSLQRPLSLIQGPPGTG
KTVTSATIVYHLMRQSNGPVLVCAPSNIAVDQLTEKIHRTGLKVIRLCAKSREAINSPVS
FLALHNQIRNMEGHSELHKLQQLKDETGELSSSDEKRYRMLKKACEKELLEAADVICCTC
VGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLVLVGDHCQLGPVVMCKKAAR
AGFSQSLFERLVVLGIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVYADERKMEGVDF
PWPQPDKPMFFYACQGQEEIAGSGTSYLNRTEASLVEKLTTRFLKSGLKPEQIGVITPYE
GQRAYLVQYMQYNGSLHAKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPR
RLNVALTRARYGIIIVGNPKVLSKQPLWNHLLTFYKENKVLVEGPLNNLKESMIQFSKPR
KLVNSANPGGHFMNTTMFDAREAIIPGSVYDRSSHLNGGPAYFNRTHDQISYISSDRAQG
TVTNLPVPIGMFMNMAHIPPRFYNQHQQAMQARQNLKNRGAAKKGSLRQQRTNLLPTNAN
VNLSQQGFNSQASQDLLTSFSQGPLMQGPLSMSQMSQPGFHGLSQPGLSQPDLSQDSYLV
EEFRSQTEGMLSQDSSYQGDRALFAASQGGQFSQPY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcttatggacctagctctcaaactttgactttccttgacaccgaagaa
gtaacagaacttcttggcgctgatacacagggctcagaatttgattttactgactttact
cttccttcgcaaactcagacttctcaattagagcatcctcaaaaccatataagaagtcag
cttaacggcccagaagttcctcttcagaatggattggcgagagatgttgctactgccact
caaggttttggtgaattgacatttgaagaagacgaagaagatcagtactatgcaaaagat
ttacctgatcatgcttgcaaatactgtgggattcatgatccaggctgtgtggttcagtgt
aatgtatgcaagaggtggttttgtaatggaagaggaaatacttctggaagtcacgtaatc
aatcatttggtacgtgccaaacacaaggaggtgactcttcataaagatggacctttggga
gaaactgttttggaatgttacagttgtggttgccgtaatgtatttgttcttggcttcatt
ccagcaaaagctgattcagttgtggtgcttctgtgccgtcaaccatgtgctgctcaaagt
agccttaaagatatgaactgggaccccgagcagtggaaacctttaattaacgaccgcacc
tttctgacttggttggttaaagttccgcaagagcaagaacaactccgggcacgtcagatc
actgcacaacaaataaataagttggaagaattatggaaggaaaatgttgatgccactttt
caagacctggagaaacctggtgttgatgaagaacctcagcaagttctgttaagatatgaa
gatggttatcagtatcaaaacatatttggaccacttgtgaaaatggaggcagattatgac
aagaaattaaaggaatcccagactcaagataatattgaagtgcgatgggatattggattg
aacaagaagatcattgcctattttaccattgccaagtcagatacagacatgagacttatg
catggtgatgagttgagactgcgatatttgggagaacttcataaaccatggtctggggtt
ggccatgtgatcaagatccctgacaactatagtgaagaagttggtattgaaatgaaaaca
aacttaggagtcccttctgaatgtacatccaactttgtagttgactttgtttggaaatca
acatcttttgaccgaatgcaagcagctttgagaaaatttgctgtagatgagacctgtgta
tctgcttatatttatcataagcttctgggacacgaagtagaagatgtcattttgcgttgt
caattacctaaacatttttctgctccaaacttgcctgagctgaaccgttctcaagtatat
gcagtaaaacattcacttcagagacctctttctttgattcaagggccaccaggtacagga
aagactgttacttctgctactattgtctatcatctgatgagacaaagtaatggccctgtt
ctagtgtgtgcacctagtaacatagctgttgaccaactgacagaaaagattcatcgcact
ggattaaaggttattcgtttatgtgcaaaaagtcgtgaagctataaattcaccagtttca
ttcctggcattacataaccaaatcaggaatatggaaggtcactcagagctgcacaagcta
caacagcttaaagatgagactggtgagctttcttcatctgatgaaaaacgttatcgaatg
ctaaagaaagcatgtgaaaaagaacttttggaggctgctgatgtaatatgctgcacttgt
gtgggtgcaggagatccacgacttgcacgctttaagttccattccattttgattgatgaa
agcatgcaagctacagaacctgaatgtatggttcctgttgttcttggggcaaaacagtta
gtgctggttggagaccattgtcaactgggtcctgtggttatgtgtaaaaaagcagcccga
gcaggattttcacaatctctttttgaacgtcttgtggtgctaggtatccgtcctctgcga
cttgaagtccagtatcgtatgcatccacaattaagcaagttcccttccaattttttctat
gagggttcacttcaaaatggagtttatgctgatgagcgaaaaatggaaggagttgatttt
ccatggcctcagccagacaagcctatgttcttttatgcctgtcaaggacaagaagagata
gctgggtctggtacatcctatctgaacagaactgaggcatccttagttgagaaattgacc
actaggtttttgaaatcgggactgaaaccagagcagataggagttatcactccttatgaa
ggtcaacgtgcttaccttgtccagtatatgcagtacaatggttctcttcatgccaaacta
tatcaggaaattgaggtagcaagtgttgatgcttttcaaggaagagaaaaggatttgatc
atcatgtcttgtgtacgctctaatgaacaccaaggaattggtttcttgaatgatccacga
agacttaatgttgctttaaccagagccaggtatggaatcatcattgtgggcaaccctaaa
gttttgtctaagcaacctttgtggaaccatcttttgactttctacaaggaaaataaagta
ttagttgaaggccctttaaataacttgaaagagagcatgatccaattcagtaaaccacgg
aaattggttaatagtgccaatccaggtggccattttatgaatacgacaatgtttgatgct
agagaagccataattccagggagtgtgtatgatagatcatctcatctgaatggaggtcct
gcatacttcaacagaacacatgatcagatctcatacatcagctctgacagagcacaaggg
actgttaccaacttgcctgtgccaattgggatgttcatgaacatggctcatataccacct
cgtttttataatcagcatcaacaggcaatgcaggctcgtcagaacttgaaaaatagaggt
gcagccaagaaaggaagtttgcgacagcaacgtacaaatttattacctaccaatgcaaat
gtgaacttatcacaacaaggttttaatagccaagcaagtcaggacttgttgacatctttc
tcccaaggtccactcatgcaaggcccactgagtatgagtcaaatgagtcagccaggattt
catggcctgtctcagcctggcttgtctcaaccagatctttctcaggatagctacctggtt
gaagaattccgttctcaaactgaaggaatgctgtcccaagattcttcttatcagggggat
cgagcattatttgcagcctctcagggtgggcagttctcccaaccatactga
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integrated database retrieval system
