Limulus polyphemus (Atlantic horseshoe crab): 106460978
Help
Entry
106460978 CDS
T08968
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106460978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106460978
Enzymes [BR:
lpol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106460978
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106460978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
Pim
Motif
Other DBs
NCBI-GeneID:
106460978
NCBI-ProteinID:
XP_022243473
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MEITKKNFKEALSVVEAAIQEASFLSIDGEFTGLCTEMSIHRFDTARERYMKLRETASNF
LLIQFGLSTFHYDAEKDRKKCDLFLQHPLMLMFFRYCFFQASSLDFLASQGFDFNKLIRD
GIPYLLPEEEEKVKNILVEKHKNEQTSSPANLQQTPGSRSVLFSPINVTELHQEFLQNII
QQTEKFLASNEESLDIEPCNSFLRKLIYQSLENKLSSGIYMETQTTENQERFIRIRKCSD
EKKAQLMKDKQDSELEELQEAVGFSKVIKLITESGKLVIGHNMILDLLHILNQFCCHLPE
SYDDFKNLTNCVFSKLLDTKHLASVQPLRDYIISTSLNDLLEQTRRKPFSVPTVEPAGDI
CAYTTINEKQHEAGYDAFITGLCFITLANHLGSFQDPPEYPVLPGSQLLKPYINKLFLGK
SHDVHFINLSGIDAEPKRDHVFHVTFPKSWKTSDLIQLFSEYGAISISWLDDASALIALK
RPEHTADVLKNLVLSSNSVYSVKTYLDFKNRHQPNLVVERKVSPVPHSDFGVPVKRRRSS
SGTCEGNLSNRSIEPIPEEDEDNFLNSPSVEPVEKKPKLERPSNSNLPPSKCSKLFDEND
NWT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaccaaaaaaaatttcaaggaagctctgtctgttgttgaggctgctattcaa
gaagcatcttttcttagtattgatggagaatttacaggtttatgtactgaaatgtctatt
cataggtttgatacagcaagggagagatatatgaagttaagagagactgcttccaatttt
ctcttgattcaatttggattatctacttttcattatgatgcagaaaaagacagaaaaaag
tgtgatttatttttgcaacacccccttatgttgatgttttttcgttattgtttctttcag
gcttctagtttagactttctagcaagtcaagggttcgacttcaacaaactaataagagat
gggataccttatttactgccagaagaagaagaaaaagtgaaaaatatcctagtggagaag
cataaaaatgaacagaccagctccccagccaacttgcagcaaactcctgggagcagaagt
gttttattttcacctatcaacgtcactgagttgcatcaagaattcctccaaaacataatc
caacaaacggagaagtttttagccagtaatgaagaaagtttggatatagaaccgtgtaat
tcttttcttcgaaaattaatctatcagtcattagagaataaactttcatcaggaatttac
atggaaacgcagacaactgagaaccaagagagatttatcagaattcgaaagtgttctgat
gaaaaaaaagcccaactaatgaaagataagcaagattctgaactggaggaattgcaagaa
gctgttggttttagtaaggttattaaactgataacagaatctggaaaacttgttattggg
cataacatgattttagatcttcttcatatccttaaccagttctgttgccatttacctgag
agctacgatgacttcaaaaacttgacaaattgtgttttttcaaagcttcttgacacaaag
catttagctagtgtacaacctctaagggattacattatttcaacaagcctgaatgatttg
ttagaacagacaagaaggaaaccttttagtgtcccaacagttgagccagctggcgatatc
tgtgcgtataccactataaatgaaaaacagcatgaagctggatatgatgcctttattact
gggctgtgttttattacccttgctaatcatctaggctcatttcaggatcctccagaatat
ccggttcttccaggatctcaacttttaaagccatatattaacaaattgtttttagggaag
agccatgatgtacacttcattaacctgagtggtattgatgccgaacctaaacgagaccat
gtttttcatgtaacatttccaaaatcttggaagacatcagacctaattcagttgttttct
gaatatggggcgatatcaatctcttggctagatgacgcttctgctttaattgcacttaaa
cgtccagagcacactgctgatgttttgaagaaccttgttctgtccagcaacagtgtttac
tcagtgaagacgtatttagattttaaaaacaggcatcaaccaaatctcgtggttgaaaga
aaagtgtctccagttccacactctgattttggagttccagtgaagaggcggagaagtagc
agtggaacgtgcgaaggaaacctcagtaatcgtagcatcgaaccaattcctgaagaagat
gaagataactttttaaacagtccatcagtggaaccagtagaaaagaaaccaaaactcgag
aggcctagcaacagtaacttgccaccttccaagtgttcaaagttatttgatgagaatgac
aattggacctag
DBGET
integrated database retrieval system
