Limulus polyphemus (Atlantic horseshoe crab): 106461009
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Entry
106461009 CDS
T08968
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106461009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lpol03000
]
106461009
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106461009
04121 Ubiquitin system [BR:
lpol04121
]
106461009
Enzymes [BR:
lpol01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106461009
Transcription factors [BR:
lpol03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
106461009
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106461009
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106461009
Ubiquitin system [BR:
lpol04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106461009
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
Nup35_RRM_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
106461009
NCBI-ProteinID:
XP_013776232
UniProt:
A0ABM1B790
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MCLDSNFGIKVYWFCQVKILAKMSSFEDQNPECPLCMEPLELDDINFFPCTCGYQICRFC
WHRIRTDENGLCPACRKQYPEDPADFKPLTQEELQKIKNEKKQKDLQRKQKISENRKHLA
NLRVVQKNLVFVVGLPPRLAEAEVLKKHDYFGKFGKIHKVVVNHSTSYAGSQGPSASAYV
TYYRAEDALRAIQAVNNIHVDGRTLKVSLGTTKYCSHFLKNQQCPKADCMYLHELGDEAA
SFTKEEMQQGKHQEYERILHEQVLGSCSHLSRRLASSPTNNTSHGQTGHKEGWSTLQHKT
DHRTNGLTKGAVLSPQGGGQKSLGGGRQSSKKHDSGEEGRKGKGRERSLEESLSRGSSSH
SNSSSRESLHTFRSQATPPVPSFPQQSWSREPDSNPGTNEETLEPSDCKAESSTLQAYCN
IIENQSPPMCETPKLDSLQNEPTSALSTYKELDDSEEDWLNHPDLAFHSESIPVNSSTDW
QAAFGFSPSNHKLHDDELGFDPWDESAKGLADLLEKEAIQKPEQPPELINPRLASVQHSY
SHLMNAKGYPNHLLLNHNQELPTRVAPPPPGFGPNHINKLVNIPIPAFSSETSSNKMTSL
MNMPPNHHIMNGYNSFQEQVPLPLQGLNNHIKHLPVHSMQSLRPKIGNALNMKDWQESLR
SMFPNINISFGPPTTQGLPPPNAPPNPKVHHMWNPYGPSWVTQDPAILSSGSIADCRSDS
PPHWTKSLHQLTTEGGTMNNYNHHMPFPMPFAYRATQWQGIPQSPPPGFSPPFQPSLKST
EPQTLAEHL
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcttgacagtaattttggtatcaaggtgtactggttttgccaagtaaaaattcta
gccaaaatgtcttcatttgaggatcagaatcctgagtgtcccttgtgtatggaacctttg
gagttggatgatataaacttttttccttgcacttgtgggtatcagatatgtcgattttgc
tggcaccgaattagaacagatgaaaatgggttatgtccagcatgtcgcaagcaataccct
gaagaccccgcagacttcaaacctctaacgcaagaagaattgcagaaaataaaaaatgaa
aagaaacaaaaggatttgcaaagaaagcagaaaatatcagaaaacagaaaacacttggca
aatttaagggttgtacagaaaaatctagtgtttgttgtaggtctacctccaagacttgca
gaggcagaggtgctaaagaaacatgactattttggaaagtttgggaagatacacaaagtt
gttgtcaatcacagcacttcatatgcaggctcacagggtccaagtgcgagtgcatacgtt
acatactatcgagcagaagatgctcttagggctatccaagccgtaaataacatacatgtt
gatggtagaacattgaaagtgtcactagggacaacaaagtactgtagccacttcctgaaa
aaccagcaatgtcctaaagctgattgcatgtatttacatgaattaggagatgaagcagct
agttttacaaaagaagaaatgcaacaaggaaagcaccaagaatatgaaagaatactacat
gaacaagtgctaggaagttgtagtcatctaagtaggaggcttgcttcttcccctacaaac
aatacaagtcatggacaaacgggccacaaagaaggttggtcaacattacaacacaaaact
gatcataggaccaatggtttaacaaagggtgctgttctgtcccctcaaggaggagggcaa
aagtcattgggaggtggtcgtcagagtagtaaaaaacatgactcgggggaagaaggaagg
aaggggaaaggaagagagagatcattggaagaaagtctgtccaggggaagcagtagtcat
agtaacagtagcagtagagagtctcttcacacatttagatctcaagcgactcctccagta
ccaagttttccccagcagtcgtggagtcgtgaaccggattccaaccctgggacaaatgag
gagacacttgaaccatcagactgtaaagcagagagttcaactttgcaggcatattgtaat
ataattgagaaccagtcccctcctatgtgtgaaacaccaaagcttgactctcttcagaat
gaacctacttctgcattgtctacatacaaagagctagatgattcagaagaagattggtta
aatcatccagatctggcttttcattcggagagcattccagtaaatagtagcacggattgg
caagcagcctttgggttcagtccatctaatcataaacttcatgatgatgagttaggtttt
gatccttgggatgaatcagccaaaggactagctgatctccttgaaaaagaagccatacaa
aaaccagaacaaccaccagagctaataaatcccagactagcatcagtacaacattcttac
tcccatttgatgaatgctaagggttatcctaaccatttgttactcaaccataaccaagaa
ctaccaacacgagttgctcctccacccccaggttttggtcctaaccatatcaacaagctt
gtaaatattcccataccagcattttcttcagaaacttcctctaacaaaatgacatcctta
atgaacatgcctccaaaccaccacataatgaatgggtataactcatttcaggaacaagtt
ccccttcctttgcaggggctcaacaaccacatcaaacatttgcctgtacatagtatgcaa
tctcttagaccaaaaataggtaatgcactgaacatgaaggactggcaagaaagcttacgt
tctatgttcccaaatatcaacataagttttggacccccaaccactcagggactaccacca
cccaatgcccccccaaatcctaaagtccaccacatgtggaatccttatggaccatcctgg
gttactcaagatccagccattctctcctcaggaagtattgcagactgtcgttcagacagt
cctccacattggacaaagtcacttcatcagctaactacagaaggaggaacaatgaataat
tataaccatcacatgccgttccctatgccctttgcctacagagcaacacagtggcaaggc
atcccccagtctcccccacctggtttcagtccaccctttcagccctctttgaaatcaaca
gaaccccagacacttgctgaacatttatag
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