Limulus polyphemus (Atlantic horseshoe crab): 106462287
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Entry
106462287 CDS
T08968
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106462287
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lpol00536
]
106462287
Glycosaminoglycan binding proteins [BR:
lpol00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106462287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
FnI_RECK
VWC2L_2nd
CFC
Motif
Other DBs
NCBI-GeneID:
106462287
NCBI-ProteinID:
XP_013777642
LinkDB
All DBs
Position
Unknown
AA seq
1480 aa
AA seq
DB search
MEVHRATRCLWLITLLCILVTAQDYPEPNGIGFDEATSCEFEGIRYADGDEWNPDPCTIC
RCLLGNTICDTEDCPDIECKTQKYIPLGKCCPICADPEQVGPEETVRPEQPYPDEVPSPQ
VPAIPIPGPRGEPGEPGTPGRTGEAGNPGQPGAHGIPGGPGPPGPPGDVSGWFQQLALQQ
GLSGDKGPSPDALSFMQAQVGPVGPRGSPGPPGPPGPQGFQGLRGEPGDGGPPGPPGQPG
ERGLPGLLGKDGEPGDDGRGGPPGPPGPPGTRGLPGMPGLPGIKGHRGFPGIDGSKGEQG
PSGEKGSMGLQGKMGIVGPMGPSGPRGERGKEGPPGPPGLRGIDGLPGPPGPPGSVGRPG
PPGFPGLPGSKGDAGQPGPKGSQGLQGPRGEPGSPGISGEDGQMGPPGTDGLPGEKGSPG
DRGPTGIPGFPGGRGPPGLSGSPGPVGPKGAPGIPGERGHKGESGKKGESGTSGPRGLPG
TPGRTGKRGRRGAPGSPGQAGPPGERGALGPRGLPGPNGPVGMKGAPGDRGSSGPQGMKG
SQGDTGRPGPQGPQGLRGPPGRPGIRGKDGNPGIRGEPGIDGKPGDQGPQGIQGLPGIIG
ARGPKGDAGLNGQDGQPGPKGERGPVGDSGKQGPVGTPGQPGPPGEPGERGAPGSQGARG
FQGLPGIPGNPGQAGKDGEPGLPGPPGQAGPHGDRGDRGFPGERGQPGAPGAAGLRGELG
PPGPQGERGSPGEKGAKGHSGPSGLVGLPGKSGPPGLSGPKGDRGDHGPPGPEGSIGRPG
EQGPQGPIGLVGPPGEPGEKGPTGQPGPEGQHGAPGNQGDRGPPGSPGPQGFPGPVGVPG
APGRKGDTGNVGQKGEQGNTGLSGLPGEKGPQGSPGIPGPKGPRGEEGKKGDTGFPGAPG
RPGNPGLEGKPGNPGPAGIPGISGIKGAQGDTGRAGVPGPSGEPGLPGFPGPKGEAGSEG
PSGPAGPPGPLGPSGERGLPGLPGLQGPRGLPGRPGAQGERGEQGTPGSDGPPGPQGLIG
PPGSPGEHGEPGIEGRPGKEGQPGIAGRPGDKGPRGEPGPPGLSGPQGQQGPPGPSGPLG
PTGSRGERGEPGPRGVTGPQGARGPAGPSGNPGMKGERGLVGEKGSKGHRGLIGLQGLPG
PHGPPGDKGMTGPPGLPGMEGPSGPKGPQGRDGQPGSPGPMGPPGPRGLSGDAGREGPLG
PPGPPGPPGPPGDSFGYDASALAALLSQGQVKGPDPLLGDEPEKLFSPNTPVEEKKKLVF
EFYDKLVEEYEQYRKPNGNKNTPAKTCKDLAIARADLPSGNYWIDPNQGDTKDSIEVYCD
MEKKATCVYPKPDKIPKDTHHRGRSGYTWYSEMENGFSFTYKADRIQLSFLQLFSEKAVQ
NITYHCRNSVVYHFAKKNNLKRAAKLMSYNDLELTAMGNPMFTYKALKDDCQFRSNNWSE
TVLEYRTNKPQRLPIVDIALRDVGSRNQQFGLDLGPVCFF
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggaggtccacagagccactaggtgtctctggcttatcactcttttgtgcatcctagtc
actgcccaggactacccggaaccgaatggtattggttttgatgaagcgacaagctgtgag
tttgaaggaatcaggtatgctgatggggatgaatggaatcctgatccctgtaccatttgt
cgctgtttgttgggcaacacgatttgtgacaccgaagattgtccagatatagaatgtaaa
acccagaaatatattcctcttgggaagtgttgtccaatatgtgctgatcctgaacaggtt
ggaccagaagaaacagttcgcccagaacagccatatccagatgaagttccaagtccacaa
gtaccagctattcccattccaggaccacggggtgaaccaggtgagcctggtactccaggg
aggacaggagaagcaggaaatccaggacagccaggagcacatggaatcccaggtggacca
ggtcctccaggaccaccaggagatgtgtcaggttggtttcagcaacttgcactacaacaa
ggtctcagtggagataaaggaccatctcctgatgcactcagttttatgcaagcacaagtg
ggacctgttggacctagaggatcccctggaccacctggacctccaggacctcaaggtttt
caaggactaagaggagaaccaggggatggaggtcctccgggaccacctggtcagccagga
gagagagggctacctggtttacttggaaaagatggagagccaggtgatgatggaagggga
ggcccaccaggtccaccaggaccacctggaacacgaggattaccaggaatgccaggtcta
ccaggtattaaaggtcataggggttttccaggtatagatggatctaaaggtgaacaaggc
ccttcaggagagaaaggttctatgggactacagggtaaaatgggcattgtaggtccaatg
ggaccttctggacctagaggagagcgtggaaaagaagggcctcctggacctcctggttta
agaggaattgatggtttacctggacctcctgggcctccaggatcagttggacgtccagga
ccaccaggttttcctggattaccaggttcaaagggagatgcaggccaaccaggacccaaa
ggcagccagggtttacaaggcccaagaggagaaccaggtagtccaggtatttcaggggaa
gatggacaaatgggtcctccaggaacggatggactacctggagaaaaaggatcacctggt
gacagagggcctactggaataccagggtttcctgggggtcgtggccctcctggactttct
ggcagtccaggacctgttggacctaaaggagcaccaggaataccaggggaaagaggacat
aaaggggaatcaggcaaaaaaggagaatcaggaacatctggaccacgaggtcttccagga
actccaggacgaacaggaaaacgaggaagaagaggagcacctggatcaccaggtcaagct
ggaccaccaggggaaagaggggctttaggaccacgaggtttacctggtccaaatggtcct
gtaggaatgaaaggagcaccaggagatcgtggttcatctggaccacagggtatgaaaggt
tcacagggagatactggaagaccaggtccacaaggccctcaagggctccggggtccacca
ggtcgaccaggaataagaggaaaagatggaaacccaggaattaggggagaaccaggaatt
gatggaaagcctggtgaccaaggaccacagggtatccaaggtcttccaggtataatagga
gcacgtggacctaaaggagatgcgggcttaaatggtcaagatggtcagccaggccctaaa
ggtgaacgaggcccagttggtgattctggaaagcaaggacctgttggaacacctggtcag
cctgggcccccaggagaacctggtgagaggggtgcaccaggatctcagggtgctcgaggt
tttcaggggcttccaggtataccgggaaacccaggtcaagctggtaaggatggagaacca
ggactgcctggtcctcctgggcaagctggcccacatggtgatcgaggagatcgagggttc
cctggtgagagaggacagccgggtgcacctggagctgcaggcttaagaggggaactagga
ccacctggaccccaaggagaaaggggatcacctggtgaaaaaggagctaaaggccattcg
ggaccttcaggtttagtgggattaccaggtaaatcaggaccaccaggattgtcaggacct
aagggagacagaggtgaccatggaccacctggacctgaaggctccataggacggccagga
gagcaaggacctcaaggcccaattggacttgttggacctcctggggagcctggagaaaag
ggtcctactggacaacctggacctgaaggtcaacatggagctcctggaaaccaaggagac
agaggtccaccaggatctcctggaccacaaggcttccctggtccagtgggtgtgccaggt
gctcctggaaggaaaggtgacactggtaatgtggggcaaaagggtgaacaaggaaataca
ggattgtctggtttacctggagaaaagggtcctcagggaagtcctggaattcctggacct
aaaggcccaagaggagaagaaggaaagaagggagacacaggttttcctggtgctcctggc
agacctggaaaccctggacttgaaggaaaaccaggcaatccaggacctgctggaatacca
ggcatatcgggcattaagggagcacaaggagacacaggtagagctggagttcctggtcct
tcaggtgaaccaggtcttccaggatttccaggacctaaaggtgaagctggatcagaaggg
ccatcaggaccagctggacctccgggtcctcttggaccttctggagaaagaggacttcct
ggacttccaggtttacaaggacctcgaggtcttccaggtcgaccaggtgcacagggggag
agaggtgaacaaggtactcctggatctgatggacctcctggacctcaaggactaataggt
ccacctggatctcctggagaacatggagaacctggaatagagggtcgaccaggaaaagaa
ggacaaccaggtattgctggccgaccaggagacaaaggtcccagaggagaacctggtcca
cctggtcttagtgggccacagggacaacagggacctcctggaccatcgggaccacttggt
ccaacaggaagtcgaggagaacgaggtgaacccggtccacgtggtgttactggccctcaa
ggtgctcgtggacctgctgggccttcaggtaatccaggaatgaaaggagagcgtggctta
gttggtgaaaaaggctcaaaaggacacagaggactcattggtttacaaggattaccagga
ccacacggtcctccaggagacaaaggaatgacaggtccaccaggccttcctggtatggag
ggaccttcaggtcctaagggtcctcaaggtagagatggtcaaccagggtctccaggccca
atgggaccgcctggaccaagaggtctatcaggagatgctggtcgagaaggtcctttaggt
ccacctgggcccccaggtccaccaggcccacctggtgattcttttggatatgatgcaagt
gctcttgctgctctccttagtcaaggacaggttaagggcccagatccactgttaggagat
gaaccagaaaaactcttctcaccaaacacacctgtggaagaaaagaaaaaattggtgttt
gagttttatgacaaattagttgaagagtatgaacagtaccgaaaaccaaatggtaacaaa
aatactccagctaagacttgtaaagatctagctattgctagagcagatcttccaagtgga
aactactggattgatccaaatcaaggggacactaaagattccattgaagtgtattgtgac
atggagaagaaagctacttgtgtctatcctaaacctgataagattcctaaagacactcat
catagaggaagatcaggctatacttggtatagtgaaatggagaatggattttctttcacc
tataaagctgaccgtatacagcttagtttcctacaactcttcagtgagaaagctgtacag
aatattacctaccactgccgaaactctgtcgtttatcattttgctaagaaaaataacttg
aaacgagctgccaagttaatgtcatacaatgacttagaacttactgccatgggtaaccct
atgtttacatacaaggctctaaaggatgactgccagttcagatcaaataactggtcagag
acagtattagagtatcgtaccaataaaccacagaggttacccattgtagatatcgctctt
cgtgatgttgggtcaagaaaccagcaatttggccttgacctaggacctgtatgcttcttt
taa
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