Limulus polyphemus (Atlantic horseshoe crab): 106462395
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Entry
106462395 CDS
T08968
Name
(RefSeq) LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106462395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106462395
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106462395
mRNA degradation factors
3'-5' decay
Pan complex
106462395
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
Pkinase
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_4
zf-CCCH_9
Stereocilin
Motif
Other DBs
NCBI-GeneID:
106462395
NCBI-ProteinID:
XP_022245351
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MIPTMNGPSGPGRKTTICRYFATSGTCFYGNDCQFMHANPNVVPNDLSLSQNRTLVVSQP
SSMRDLTINTHNKVTEGPPNPVTSMDPLFQAFAPTAGLPPESKLQTYMNIAPRTLSPSVE
KPKSFVPPSSNLHSGDVTNAMAALAVETSRKTPNPTAAEFVPMSSVARPTAGHLTHSMST
PSFFQYAIGASGLTASTPFGRFDVPQGDSPGLSPDQSPLVSRKSRSPLTTTYVGGPSVTV
TTSTTQDQFAPPGTVYQQESVGGTTYFFAAEEAGGAPKETPAPIIMPDFTVYSGNPAHVE
HMKPKANAPSFFLPDELRMDILHRRSLTLAQVNPEQYQDLPTEVDNYHNLCPLEPSKDGV
PNKSATFRFYXTSVYKATNMKTGVYYCLRRIHGFRLTNAKCMTVVETWKKIQHSNLVHLR
EMFTTKSFGDHSIVFVYDYHPGADTLMNQYFSQPGLTTAINGYHPAVFNNVDGMTRSYGH
SKGGLRQHAGLLPESQIWAYVVQLSSALRTIHAAGLACRAFEPTKILITGKSRLRLNCCG
IFDVLSYDASQINPKDLIRHFQQEDLLAFGKVVLALACNSLAAVQRENVQASMELVSRNY
SADLRNLLMYLLSSQSRVRSINEIMPMIGARFYTQLDAAQMRSDVIENELAKEIENGRIL
RLLSKLGTINERPEFNMDPTWAETGDRYMLKLFRDYLFHQVTEDGRPWIDMAHVVQCLNK
LDSGSLEKICLTSRDEQNVLVVSYAELKHCFESSFNELLAAQKPHTPT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgattccaactatgaatggcccttccggacctggtcgaaaaacaaccatatgtagatat
tttgctacaagtggaacttgtttttatgggaacgactgtcaattcatgcacgctaaccct
aacgtcgtaccaaatgatttatcgttatcacagaatcggactttagtggtttctcagccg
tcgtcaatgcgagatttgacgattaatactcataataaagttacagaaggacctccaaac
cctgtcacgagcatggaccctctgtttcaagcttttgcaccaactgcaggattacctcct
gaatcaaaactacaaacatacatgaatattgcaccacgtacactgtcaccttcggtagag
aaacccaaatcttttgtacctccatcttccaacctgcattctggtgatgtcactaatgcc
atggctgctttagctgttgaaacttcaagaaagaccccaaatcctactgctgcagaattt
gttcctatgtcatctgttgcaaggcctacagcaggacatttaacacacagtatgagtaca
ccttcttttttccaatacgccataggtgcatcaggtctgacagccagtacaccttttggt
agatttgatgtgccacagggtgacagtccaggtctttctcctgatcagtctcctttagtc
agcagaaaatctagatctccattaacaacaacttatgttggcggcccttctgtgactgtt
acaacctcaaccacacaggaccagtttgcaccaccaggaacagtctatcaacaagaatca
gttggagggacaacatacttttttgctgcagaagaagctggaggagctccaaaagagaca
cctgcacctattataatgccagatttcacagtgtactcaggaaatccagcacatgtcgag
cacatgaagccaaaggctaatgctccttcattttttcttccagatgaactgagaatggat
attctacatagacgcagtttaaccttagctcaagtcaatcctgaacagtaccaagatctt
ccaacagaagttgataactaccacaatctctgtccattggaaccttcaaaagatggtgtt
ccaaataagtctgcaacattccgattttatnntacttctgtttataaggccacaaacatg
aaaactggtgtttactactgtttaagaaggatacatggtttccgactgactaatgcaaaa
tgtatgacagtcgtagaaacttggaagaaaattcagcattctaatttggtgcacctacga
gagatgtttactacaaagtcttttggtgatcactctattgtgtttgtgtatgattaccac
ccaggagctgatactttaatgaaccagtacttcagccagccagggctcacaactgctatc
aatggatatcatccagcagtgtttaataatgttgatggaatgactagatcatatggccat
agtaaaggtgggttgagacaacatgcaggacttttacccgagagtcagatatgggcctat
gttgtacaactgagttcagctttacgtacaattcatgctgctggccttgcatgtagagcc
tttgaacctactaagattcttatcacaggaaagtccaggctgcgacttaattgttgtggg
atttttgatgtactgagctatgatgccagtcagatcaaccctaaagatctcatacgtcat
ttccaacaagaagatcttctggcctttggtaaagttgtactggctctggcctgcaactct
ctagcagctgtacaacgagagaatgtacaggcctccatggagcttgtttcaagaaactac
tctgctgatctcagaaatcttctcatgtatcttctttcaagtcagagtcgtgtacgtagc
atcaatgaaatcatgccgatgattggtgctagattttacactcagcttgatgcagcacag
atgcgaagtgatgtaatagaaaatgaattagcaaaagaaattgaaaatggaagaatactt
cgtttgctttcaaaacttggaaccatcaatgaacgacctgaatttaacatggatccgacg
tgggcagaaactggagatcgatatatgctgaaactgtttagagattacctctttcatcag
gtcacagaagatggcaggccttggatagacatggctcacgttgtgcaatgtttaaataag
ttggattctggctcacttgagaagatttgcctcacatctcgtgatgaacagaacgtcttg
gttgtcagttatgcagaactgaaacattgtttcgaatcatccttcaatgaattactggct
gctcagaagcctcatactcccacataa
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