Limulus polyphemus (Atlantic horseshoe crab): 106463843
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Entry
106463843 CDS
T08968
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106463843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106463843
03041 Spliceosome [BR:
lpol03041
]
106463843
03009 Ribosome biogenesis [BR:
lpol03009
]
106463843
03016 Transfer RNA biogenesis [BR:
lpol03016
]
106463843
Enzymes [BR:
lpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106463843
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106463843
Spliceosome [BR:
lpol03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106463843
Complex C
U4/U6.U5 tri-SnRNP related factors
106463843
Ribosome biogenesis [BR:
lpol03009
]
Eukaryotic type
Pre-60S particles
Helicases
106463843
Transfer RNA biogenesis [BR:
lpol03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106463843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
106463843
NCBI-ProteinID:
XP_013779377
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MADAEDLFSVFEDVPSTSTNKFLKKHEKIPEVKDEKGSPILNEHMSSDDFVKSVIEGKRG
FGDDEEGETLAKKQKTECLLDDINPSDYSSRIQIHTVESLEACLHEVAVPPDLEYVPLRT
FSGKPVKEYSFILDPFQKEAILCLENNQSVLVSAHTSAGKTVVAEYSIAMSLQNKQRVIY
TTPIKALSNQKYREFYEEFKDVGLMTGDVTINPSASCLIMTTEILRSMLYRGSEVMREVG
WVVFDEIHYMRDKERGVVWEETIILLPDTVHFVFLSATIPNAIQFAEWICHLHNQPCHVV
YTEYRPVPLQHYIFPSGGDGLHMVVDENGTFKEENFNTAMSVLQNVGDAAKGDQGMKGRK
GGFKGESNCYKIVKMIMERNFAPVIVFSFSKKECEAYALQMSKLDLNTNEEKNLVVEVFN
NAMDVLSEEDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETF
AMGLNMPARTVLFTNARKFDGQDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDEKMSP
SVGKDIVKGLPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNYAAIPQLYDKL
KEKQEDLDKLVIPREQEVSTYYKIRQQLANLAKEFQSYITKPLYCVPYLQPGRMIKVKNG
EDDFGWGVVINYQKKTSPKDNPADVETTYVVDTLLHVSKDSAKTKVTSQLKPPPPGEKGE
MQVVPVMLHLICQISSVRLYYPQDLRPLDNRMSVLKSIQEVHKRFPKGVPLLDPIEDMGI
KEKGFKDIVRKIEAFEHRLYNHSLYGDREIEDLYKMFDKKMALVQEMKGVKAELKKAKSL
LQMDELKCRKRVLRRLGYCTATDVIEVKGRVACEISSADELLITEMVFNGVFNDLNVYQA
TALLSCFVFQEKSSEMPRLTEELSGPLRQMQEAARRIARVSKEAKLDLNEDNYVESFRPH
LMDVIHAWSNGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQASKAIGNTELENKFAE
AIKLIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgctgaggatttgtttagtgtgtttgaagatgtaccgagtacaagcacaaat
aaattcttgaagaagcatgaaaaaataccagaagtgaaggatgagaaaggatcacctata
ttgaatgaacatatgagttctgatgactttgtgaagtctgtgattgaaggaaaacgtggc
tttggtgatgatgaagaaggtgaaactctggctaaaaaacagaagactgagtgcttactc
gatgatattaacccatcagattattcttctagaattcagattcataccgtggaaagtttg
gaagcttgcttacatgaggtagctgtacctccagatttagaatatgtaccactgagaaca
ttttcaggtaaaccagtgaaggaatattcttttattcttgaccccttccagaaggaggct
atcctttgccttgaaaataaccagtctgtgctagtttcagctcacacttcagcagggaag
actgtagttgctgaatattccattgctatgtcactgcaaaacaaacagcgtgtgatttat
acgactccaattaaagccctgagtaatcaaaagtacagagaattttatgaggagttcaaa
gatgttggtttaatgactggtgatgttacaataaacccttcagctagctgtttgattatg
acaacagagatcttgcgtagtatgctgtatagaggttctgaagtgatgagggaagtagga
tgggtggtgtttgatgagattcactacatgagggacaaagagagaggagttgtttgggaa
gaaaccatcattttattaccagacacagttcattttgtatttctgtctgcaactattcca
aatgcaatccagtttgccgagtggatctgccatttacataatcagccttgccatgtggtt
tatacagaatacagacctgttcctttacaacattatatttttccatctggtggagatggg
ctacacatggttgtggatgaaaatggtactttcaaagaagaaaactttaacactgcaatg
tcagtgttacagaatgttggagatgctgcaaagggagatcagggaatgaaaggaagaaaa
ggtggattcaaaggagaatccaactgttacaagattgtgaaaatgataatggaaagaaac
tttgcacctgtaattgtgttcagttttagcaaaaaagaatgtgaagcatatgctctacaa
atgtcaaagttggatttaaacacaaatgaagaaaaaaatcttgttgttgaagtcttcaat
aatgctatggatgtgttgtcagaagaagacaaaaaacttcctcaggttgaacatgttctg
ccacttttgaaacgaggaattgggattcatcattcaggtttgttgccaatattaaaagaa
acaatagaaattctcttctccgaaggtttgattaaggcattatttgcaacagagacattt
gcgatgggattaaatatgcctgcaagaacagttctttttacaaatgctcggaagtttgat
gggcaagatttcagatgggtaacatcaggagaatatatacagatgagtggacgtgctggt
cgacgaggattggatgaacgaggaatagttattttgatggttgatgagaagatgagcccc
tctgttgggaaagatattgtaaagggtctgccagatcctattaacagtgcctttcatctg
acatacaacatggttttgaacttgttgcgtgttgaggaaataaacccagaatacatgctg
gaacgaagcttttttcagttccagaattatgcagccataccccagctttatgacaagcta
aaggagaagcaggaagacctagataaacttgtgataccaagagaacaagaagtttctact
tattacaaaatcaggcaacagttggcaaacctggctaaagagttccagagttacataacc
aaacctttgtactgtgttccatacttacagcctggaaggatgattaaggtaaagaacggt
gaagatgattttggctggggagttgttataaattatcaaaagaaaacatctccaaaggat
aacccagcagatgttgaaactacttatgttgttgatactttactgcatgtgtccaaagac
agtgcaaaaacaaaggtaacttcacagttgaaacctccaccccctggagaaaagggagaa
atgcaggtagtgccagtaatgctacatctaatatgtcagattagttctgtaaggctttac
tacccacaagatctgagacccttggacaaccgcatgtctgttctcaaatccatacaggag
gttcacaagagatttcccaaaggtgtgcctttgttagaccctatagaagacatggggata
aaggagaaaggtttcaaagatattgttaggaaaattgaagcttttgaacatagactttac
aaccattctttgtatggcgatagagagatagaagacctgtataaaatgtttgataaaaag
atggctctcgttcaagaaatgaagggtgttaaagctgaattgaagaaagccaagtctttg
cttcagatggatgaacttaaatgtcgaaagcgtgttttacgacgacttgggtattgtaca
gctacagatgtaattgaagtgaagggacgagttgcttgtgaaattagtagtgcggatgag
ttactgataacagaaatggtttttaatggagtcttcaatgatttgaatgtctatcaagct
acagcactcttatcctgctttgtgtttcaagaaaaatccagtgaaatgcccaggctgaca
gaagagctgtctggccctcttagacaaatgcaggaagcagctcgaaggatagcccgggtg
agtaaagaagctaagttagacctgaatgaagacaactatgttgaatcctttcgtccccat
ttgatggatgtaattcatgcatggagtaacggagctacctttgcacaaatatgcaaaatg
actgatgtttttgaaggaagtataatcagatgtatgaggagacttgaagaactcttaaga
cagatgtgtcaagcatccaaagctataggaaacacagaactagagaacaagtttgctgaa
gccatcaagctaatcaagagagacattgtgtttgcagcaagcttgtacctgtag
DBGET
integrated database retrieval system
