Limulus polyphemus (Atlantic horseshoe crab): 106465760
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Entry
106465760 CDS
T08968
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106465760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106465760
Enzymes [BR:
lpol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106465760
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106465760
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106465760
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
106465760
NCBI-ProteinID:
XP_013781448
UniProt:
A0ABM1BGC6
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MSVCGYLVIKSKNFSVYFFIGTNCKLQNSDSFKPSRNTNKVIFNVITHVSVNEAFPMSRS
LHKDKDKDDYESPNPRRTHTIMSPEEVAAGKRSFWPELEITGPIRNLSPALWRMNHLTSL
YLNDNNLSRIPPDIARLTCLIHLDLSCNKLRGLPAELGDLVLLRELLLNNNFLRVLPYEL
GKLFQLNKLGLKGNPLSHELYTKYTKPNGTQELLAFLLDNLPVTQLHPPQRPWIPLALPD
SQKPTCIFTVMCYNILCPKYATRQLYGYCPSWALSWEYRRKGIMEEIRHYSADIISLQEV
ETDQFYNFFLPELKHEGYDGIFSPKSRAKIVLESERKHVDGCAIFFRSDKFSLIKDHLVE
FNQLAMANAEGSDDMLNRVQTKDNIGLTALLQTREGAFENGTADTSQIHQPLLVCTAHLH
WDPEFCDVKTIQTMMLMNELQSIVEEASQSFYSGSQRCDANNIPLLLCGDFNSLPGSGVV
EFLSSGRISVDHIDFKKLGYKDCLRKLSSTDKTNEYTHDFKLSRAYKDDIMAYTNYTYDF
KGIIDYIFYSKKHITVLGLLGSLDQEWIKENKIAGCPHPHIPSDHFPLLVEVEMTLPTSS
PMLLNGLMLNR
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtttgtggttacttggttattaagtccaaaaatttttctgtttactttttcatt
ggcacaaattgtaagttacagaacagtgattcttttaagccctccaggaacacgaataaa
gtaatatttaacgtaataacgcacgtatctgtcaatgaagcattccccatgtctagatca
ttacataaggataaggacaaagatgattatgaatctccaaatccacgtagaacccacacc
atcatgtcacctgaggaagtggctgcaggaaaaagatccttttggccagaactggagata
acaggacctataagaaatctcagtccagctttgtggagaatgaatcatctgacatccctg
tacctgaatgataataatctgtctcgaatacctcctgacattgctcgtctgacctgcctc
atccacctcgacctatcttgcaacaaacttcgtggtcttcctgctgagttaggagacctt
gtacttcttcgggaactgcttttgaataataattttctgagagtccttccttatgaactg
ggaaagcttttccaacttaataagcttggtttaaaaggcaatcccttgtctcatgaatta
tataccaagtacactaaacctaatggtacacaagaacttctagcctttcttcttgacaat
cttcctgtcacccaacttcatcctcctcaaagaccatggattcccttagccctcccagat
agccagaagccaacatgtattttcactgtaatgtgttacaacatcctgtgtcctaaatat
gccacccgtcagttgtatggttattgtccatcttgggccttgagctgggaatacagacgg
aagggtataatggaagaaatacgccactattctgcagatatcatctctttgcaggaagta
gaaactgatcagttctataactttttcttaccggagttaaaacatgaaggctatgatgga
attttttcacctaagtcaagagcaaagattgtactggaaagtgagagaaaacatgtagat
ggttgtgccattttctttcgctcagacaaattttctctcattaaagatcatcttgtagag
ttcaaccagttggctatggctaatgcagaggggtctgatgacatgttgaatagagttcag
actaaggataacataggtcttacagcacttttgcaaaccagggaaggagcattcgaaaat
ggtacagctgatacctctcagattcatcagccccttctggtatgtacagcccacttacac
tgggatccagagttctgtgatgtcaagaccattcaaactatgatgttaatgaatgaatta
cagagtattgtagaagaagcttcacagagtttctattcaggctctcagaggtgtgatgct
aacaacatacctctgcttctctgtggtgattttaactctcttcctggatcaggagttgtg
gagtttctgtcttcaggaagaatctctgtagaccacattgacttcaagaagctaggttac
aaagattgtcttcggaagttaagtagcacagataaaacaaatgaatacactcatgatttc
aagttatccagagcatacaaagatgacatcatggcttacacaaattatacatatgacttc
aagggtatcattgattacatcttctactctaagaaacatattactgttctgggattgtta
ggatcattagaccaagagtggataaaagagaacaagattgctggctgtcctcatcctcac
atcccatccgatcactttccactgctcgttgaagtagagatgaccctcccaacttcttca
ccaatgctccttaatggactaatgctcaacaggtag
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