Limulus polyphemus (Atlantic horseshoe crab): 106466844
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Entry
106466844 CDS
T08968
Name
(RefSeq) protein NRDE2 homolog isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106466844
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106466844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
106466844
NCBI-ProteinID:
XP_022250617
LinkDB
All DBs
Position
Unknown
AA seq
1260 aa
AA seq
DB search
MFTCIIVKHQQKMNSKQGTTVDTRFSSATEDESETELEVESTVSAGSLFPAYCGNVPRAK
NESAGSSHQFEWLQNKSFPGRSTTDLAKLVEEESEENLTEEKENPEGTEDYFITTEGKEF
SKEGKIARSKKSLKKEKKNKHKHKKYKTKSKSFKPSISDDEDYETKESIYSQMSKMVFIE
ETGLAPERAFHVDSKHDRNNLAFSSLYHQHIARYYEEVRHPLGSNIILWPPDKERKKKKK
DKLRYYSKKYALLLQDVENVLDLSVQSLQKSVALKDYVPLSLSVNEQGFSKLNSINSKEY
NCFNPLGVYDSSTVLYLQGKGKESEVGSSSSLKPTEKQWLYQKTEEFNKYLTEHPGDEQK
WLDFIDFQDIAAAAMFENHTLSSTELEKSKRKNQNLMVTEKKLAILESALKSNPCSIRLA
VSRLELGQNIWEIEKLLQEWKQLIFHNPNSSYLCQRYITFVQTQLSYFTVSKTVKVYSHC
LMTLNKILEGIFVSHTAPEDLEENMLDIFYHFCSFLHQCGQTERAVASFQALVEFNMYTP
KSLTLKASLSDWIVLFEPFWDSGSPRFGEEGALGWATVITEKNIGSNFAYNPDLNKNEDE
ILNRCLSKSETWLHFENLREGHYWLPWRPGSGSANNDETCEDPERMVLVDDVSNVLFRLK
SESTKFYLVLLFLQFLGVRTHNHSHIACSRSLCLCPTLVHNTPIEQQYSFHSSFIFLCNK
QTFQPFKQFLVHNTDQFETFITRIFEQSLQIFSHDLQIELLISWFQYTIDSLFYISKQVD
SKIYKQKCKLARKKAKNFLKKEVNRNNLTLWEWYGKLEWACNNRKEAEKIFETSFEASLN
GEISSQQRTLWSLTRTYIELELGLNNILYSRKSYIRDESDEALKKKILWVLLCLGGSTKY
SAFSEKTFEVVTPVRILKAQNAFKTILEEVLQHVCLIQDTQSNFSSILSFEQPWKQVVDI
ASCFAFFQYFTHGLAAAASVFESLFTQLVKNESIQSELLKENLYEVYINLIAYDSQRPLV
PLKSLRSHLTEALTAFPSNSQFLAGLVNMETNSLVTGRLRRFFNDILKFPDKTSPIIWMF
AVYAEHKRHEKISKEIESACNDKNISGSVVPSVPDCGVTWRIRSLFERALDESPSRHCVG
LWRWYLKFEVERQNYQRAEVIFYRALQQCPWAKDLYVDGIAYFPNKLEEIHDIMIEKEIR
VRTPPEEIEMLQEHHGKSGKHEDEQQTEENIWTYQKFHTYFVACPMVFSHGRLHLVRKGL
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgtttacatgtattattgttaaacatcaacaaaaaatgaatagtaaacaaggtaccaca
gtcgatacacgattttcttctgctactgaagatgaaagtgaaactgagctcgaagttgaa
tctactgtaagtgcaggatctctttttcctgcatattgtggaaatgtacctagggctaaa
aatgaatcagctggtagtagtcatcagtttgagtggcttcaaaataaaagtttcccaggc
aggtcaacaactgatttagcaaaattagtagaagaagaaagtgaagaaaatcttacagaa
gagaaggaaaacccagaaggtactgaagattattttataactactgagggcaaagaattc
tcaaaggaaggaaagatagctaggtccaagaagtctttgaaaaaagaaaagaaaaataaa
cataagcacaaaaagtacaaaaccaaatcaaaatccttcaaaccatccatctctgatgat
gaggactacgagacaaaagaatcaatatacagccagatgtcaaagatggtgttcattgag
gaaactggattagcaccagagagagcatttcacgttgattcaaagcacgacagaaataat
cttgcttttagttcactctatcatcaacacattgcacgttattatgaagaagtaaggcat
ccattaggatcaaatataattctgtggccacctgataaggaaagaaagaagaagaaaaaa
gataagcttcgttattatagtaaaaaatatgctttacttttacaggatgttgagaatgtt
ctggatttgtcagtgcaatctttacaaaagagtgtagctttgaaagattatgtaccactt
tcattgtcagttaatgaacaaggattttccaagttaaactcaatcaattctaaagaatat
aactgttttaatcctcttggtgtgtatgattcaagtacagtattatatcttcaagggaaa
ggtaaagaatcagaagtcggtagtagttcttccttgaagcccacagagaagcagtggtta
tatcaaaagactgaagagttcaataagtacttaacagaacatccaggggatgagcaaaag
tggttggactttattgattttcaggacattgctgctgctgctatgtttgaaaaccatacg
ctaagcagtacagaacttgagaaaagcaaaagaaaaaatcaaaaccttatggtaactgag
aaaaaacttgcaatattggagagtgccttaaaaagtaacccttgctctattcgtcttgct
gtgtcgaggttagaactaggacaaaatatttgggaaatagaaaaacttttacaagaatgg
aaacaattgatatttcataatcctaatagctcatatctgtgtcaaagatacattactttt
gtgcagacacaactaagttatttcactgtgtccaaaactgtcaaggtctatagtcattgt
ttaatgacactaaataaaatcttagaaggcatttttgtatctcatactgcaccagaagac
ttggaagaaaatatgcttgatatattctaccacttctgttcttttcttcaccaatgtgga
cagacagaaagagcggtggcgtcgtttcaagctttagttgaattcaatatgtatactccc
aaatctctgacgttgaaagcatctttatcagactggatagtgctatttgaacctttctgg
gacagtggaagtccaagatttggtgaagaaggtgctttgggttgggcaacagtaattaca
gagaaaaatattggttcaaactttgcgtataatcctgatctaaacaagaatgaagatgaa
atattaaatagatgtctgtctaagagtgagacatggcttcactttgaaaatctacgtgaa
gggcattattggttaccctggcgtcctggatcaggctcagccaataatgatgaaacttgt
gaagatccagaaaggatggtacttgttgacgatgtcagtaatgtcttatttagattgaag
tctgaaagcaccaaattttatcttgttttgttgttcttgcagtttcttggagtacgcact
cacaatcattcccatatagcatgtagtcggagtctttgtctgtgtcctaccttggtgcac
aacactccaattgaacaacagtattcattccattcctcatttatatttctttgcaacaaa
caaacatttcagccattcaaacagtttcttgttcataacactgaccagtttgaaactttt
ataactagaatatttgaacagtctttacaaatttttagtcatgatttacagatagaactg
ctaatttcttggtttcaatacactattgattctcttttctacatatcaaaacaagttgac
tctaaaatttataaacagaagtgtaaattagcaagaaaaaaggccaaaaattttcttaaa
aaggaagtaaataggaacaacttgacattatgggaatggtatggtaagctagaatgggct
tgtaataatcgtaaagaagcagaaaagatattcgaaacaagttttgaagctagtttgaat
ggagagattagcagtcagcagagaacactgtggtctttaacaagaacctatattgaactg
gaacttggtttaaataacattctatattctagaaaatcttacataagagatgaaagtgat
gaagccttaaagaagaaaattttgtgggttttgctatgtttaggaggcagcacaaagtat
tctgctttctctgagaaaacttttgaagtagtaactccagttcgaatcttaaaagcacag
aatgcattcaaaactattcttgaagaagttctccagcatgtttgtctaatacaggatact
caatcaaatttttcaagtatattatcttttgaacaaccctggaaacaagtagtggatatt
gcatcttgctttgctttctttcagtatttcactcatggtttagctgcagcagctagtgtg
tttgaaagtttgtttacacaacttgtaaagaatgagagtattcagtctgaactacttaag
gagaatttatacgaagtatatataaatctaatagcctatgatagtcagcggcctctagtt
cctctcaaatctctgagatcacatttaactgaagcacttacagcttttccatctaactcc
cagtttcttgcaggcttggtaaatatggagacaaactcactagtgacaggaagactaagg
aggttcttcaatgatatattgaagttcccagacaagacttcaccaataatttggatgttt
gcagtgtatgcagaacacaagaggcatgaaaaaatctctaaggaaattgaatcagcatgc
aatgataagaacatatcaggatcagtagtgccttcagttccagactgtggagttacatgg
agaataagatctctgtttgaaagggcacttgatgaatcaccttcacgtcattgtgttggg
ttgtggaggtggtacttaaagtttgaggtagaacgacaaaactatcagagagcggaagtt
attttctatcgagccttgcagcagtgcccatgggccaaggatctatatgtggatggtatt
gcatatttcccaaacaaattggaggaaatccatgacataatgattgagaaggaaataaga
gtacgcacgccaccagaagaaattgaaatgttacaggagcatcatgggaagagtggtaaa
catgaagatgaacaacaaactgaagagaacatctggacttatcagaagtttcacacttat
ttcgttgcttgcccaatggtgttctcacatggaagattacatcttgttagaaaaggcctg
tag
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