Limulus polyphemus (Atlantic horseshoe crab): 106468078
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Entry
106468078 CDS
T08968
Name
(RefSeq) helicase SKI2W-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106468078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106468078
Enzymes [BR:
lpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106468078
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106468078
mRNA degradation factors
3'-5' decay
Ski complex
106468078
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
106468078
NCBI-ProteinID:
XP_013783936
UniProt:
A0ABM1T9Y4
LinkDB
All DBs
Position
Unknown
AA seq
1281 aa
AA seq
DB search
MADVLSIEDLLSFDLEIVELGSTGKVDIQRKDQESPPVPKSTLPFGPPPLLSDFKTQLLE
FLDHAEKLPIHHVDHVQKFIPRKPNVASLYSLDLEPLQTSLQVDRDPTTGQLLGFKEVKT
EEQGATAKNSMSLQRAPGPPSEAVRGSSTNIPFWPGGMDEPSMEMLKAATKQEDIDFDRG
LLSVPPGFKDGMTFEKPELPESETDTSTKEVQILKLMDIMSIDDDWDLQACVTDTFKKTR
EEEIQEPKKVTIEAVSVKEEEVWEEIIEKKPLSVTLKIEDVPSVKETLHSSSSEWATMVN
ISDAVTDFDKKIPNMARTWEFDLDNFQKQAILHLENHESVFVAAHTSAGKTVVAEYAIAL
SEKHMTKTVYTSPIKALSNQKFRDFRETFKDVGLITGDLQIKPEASCLIMTTEILRSMLY
NGSDIIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVELILLSATVPNTMEFADWIG
RTKKKKIYVISTLKRPVPLEHYLYTGSGGKSRDEKFLIVDENSKFSTKGYQAAVNAKNER
ASKFQQTRGPKGPRQNVMPQQEKNTYIALINHLTKLEKLPVVCFTLSRNRCDNNAFLLSS
VDLTTAREKGEIHSFVDICVKRLKEADRRLPQVLHMRELLKRGLGVHHSGILPILKEVVE
MLFQKGLVKLLFATETFAMGVNMPARTVVFDSIRKHDGKTFRDLLPSEYIQMAGRAGRRG
LDSTGTVIILCKGDVPEMSDLYKMMLGKPTKLESQFRVTYTMILNLLRVEKLRVEDMIKK
SFGEIFSQKNQASHQVKLKSLGERMGCLPKLDCVTCNTDIEQYYEYLQQFETLKHDLMSV
ITSHPQGIKVLSAGRVVVVHTEHHPNVIAVILATNSDPKSRTFTVLALSERSTQEENEIL
SLELAIKRPSSVGPPKLNSNKLEEGDNLEDSLKPYSSHLFKPEGAPGQCLLDISSKDLQY
ITTKTIKLDPNKIIMDCKKRQQPRFRNDPPGPSTMSATQEIAKIHVSNIRQLPRLNLLKD
LSLRDIELVEQVKKLEQLEGNLDQFLCLNCPNFLEHFKHTKEVMKIKREIANLKYLLSEE
SLQCLPEYRSKIQVLQTLGYVDERKTVKLKGNVACEMSNHELLTTELILEDILTPLEPSE
IAALLSCMVFQQKTDNVPKLTKTLEEGVKKIKEIAARIGQTQRDCGLLEPVMDFVDQYKF
GLTEVVYEWARGTPFAKITDLTDVQEGIIVRCIQRLDETLKDVRNAARIIGNPVLHQKMV
EASDLIKRDIIFAASLYTQNV
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgttctcagcatcgaagatttactctcatttgacttagaaattgtggagctt
gggtccactgggaaagtagacatacaacgaaaagatcaagaatcccctcctgtaccaaag
tcaacacttccttttggaccccctccactattatcagacttcaagactcaattattggaa
tttctagatcatgcagagaaacttcctattcatcatgttgaccatgttcaaaagtttatt
ccacgaaaacctaacgttgcatctttatattctttggacttggaaccactacagacttct
ctacaagtagacagagatcccaccactggtcagttgttgggctttaaagaggtaaaaact
gaagaacaaggagccacggcaaaaaactctatgtccttgcagcgagctccaggccctcca
tctgaagctgttcgtggaagctcgactaatatccctttctggccaggaggaatggatgag
ccaagcatggagatgttaaaagctgctacaaaacaagaagatattgattttgacagagga
ttactgtcagtgccacctggtttcaaggatggaatgacttttgaaaaacctgaactacca
gagtcagaaacagacacaagtacaaaagaagtacaaattttgaaactaatggatatcatg
tccatagacgatgattgggacctgcaagcttgtgttactgataccttcaaaaaaactcga
gaagaagagattcaagaaccaaaaaaagttacaatagaagctgtttcagtaaaagaagaa
gaagtctgggaagaaattatagaaaagaaacctttgtcagttacactgaaaatcgaagat
gtaccttcggtcaaagaaacgcttcattcaagctcatcagagtgggctaccatggtgaac
atatctgatgctgtaacagattttgacaagaaaattcccaacatggcccgaacatgggaa
tttgatcttgataatttccaaaaacaagccattcttcacttagaaaaccatgagagtgtc
tttgtggctgctcacacctctgcagggaaaactgtcgtagctgaatatgctattgcgctt
tcagaaaaacacatgacgaagacagtgtacacatctcctatcaaggctttgtctaaccaa
aagttccgtgactttcgagaaacatttaaggatgttggacttattacgggtgacttacaa
ataaagcctgaagctagttgcttgattatgactacagaaattttgagatctatgctttac
aatgggtcagatataatcagagatttggaatgggtcatatttgatgaagttcactacatc
aatgatgctgagcgaggagttgtgtgggaggaggttctgatcatgttacctgatcatgtt
gagttgattctactaagtgccactgtacctaatacaatggagtttgcagactggattgga
cgtaccaaaaaaaagaaaatctatgttatcagcacacttaagaggccggtgcctttggaa
cactatctctacactggaagtggaggaaaatcgcgagatgaaaaattcttgattgttgat
gaaaatagcaaattctcaaccaagggataccaagcagctgtcaatgccaaaaatgagaga
gccagtaaattccaacaaaccagaggtcccaaggggccaagacagaatgtcatgcctcag
caggagaagaacacatacattgctttaataaatcatcttaccaaattggagaagcttcca
gttgtgtgctttaccttgtcacgtaatcgttgcgacaacaatgcattcctgttgtctagt
gtcgacctaactactgctcgagagaagggggaaatacactcatttgttgacatttgtgta
aagcgattgaaagaagcagatcgacgcttacctcaggtgttgcatatgagagaactccta
aaacgtggacttggggtccatcacagtggaattctgccaatattgaaagaggttgtagag
atgctgtttcagaaagggttggtcaagcttttatttgctacggaaacttttgccatgggt
gttaatatgccagcaagaacagtagtgtttgactcaattcggaagcatgatggaaaaaca
tttcgtgatcttctgccttcagaatacatccagatggcaggacgagcaggccgtagaggt
ctggattcaacaggaactgtgatcattctgtgtaaaggggatgttccagaaatgtctgac
ctgtataaaatgatgttgggaaagcccactaaactggagtctcagtttcgagtcacttac
acaatgatcctgaatttactaagagtggaaaagctacgagtggaagacatgatcaaaaaa
tcatttggggaaattttttcacaaaaaaaccaagcaagtcaccaagtgaaattgaagtcc
ctcggtgagcggatgggatgtctcccaaaacttgactgtgtaacctgcaatactgatatt
gaacagtattatgaatatctccaacaatttgaaacactaaaacatgatcttatgagtgtt
atcacttctcatcctcaaggtataaaagtgttgtctgctggtcgtgttgtggttgttcac
acagaacatcatccaaatgtgattgctgtcatccttgccactaactctgatcccaagtca
aggacttttactgtgttagctttatcagagcgatcaacacaagaagaaaatgaaattctt
tcactggagttagccatcaaacgtccatcttctgtagggccaccaaagttaaatagcaat
aagcttgaagagggagataatcttgaagatagcctgaaaccttactcaagtcatcttttt
aaaccagagggtgcacctggtcaatgcttattggatattagctccaaagatcttcaatac
attactacaaaaacaataaagttagatcctaataagatcataatggattgcaagaaaaga
cagcagcctcgtttcagaaatgatccaccaggtccatcaacaatgtcagcaactcaagaa
atagcaaagattcacgtttctaacatacgacaacttcctcggctcaatcttttgaaagat
cttagtctacgtgatattgagcttgtggaacaggttaagaagttagagcaattagaaggc
aacttggaccagtttttgtgtcttaactgtccaaactttttggaacatttcaaacataca
aaagaagtgatgaaaataaaaagagaaattgccaacttgaaatacctactatctgaagaa
agtttacagtgtcttccagaatatcgatcaaaaatacaggtattacaaacattgggatat
gttgatgaaagaaaaacggttaagctgaaaggaaatgttgcctgcgaaatgagtaaccat
gaactcctaactacagagttaattctagaagacattttgactcctttagaaccttctgaa
atagctgctctgttgtcatgtatggtgtttcaacagaaaaccgataatgtgccaaagtta
actaagactcttgaagagggagtaaagaaaatcaaagagattgctgcacgaataggtcag
actcagagagattgtggtctgttagaacctgtaatggattttgtggaccaatacaagttt
ggactgacagaagtggtgtatgaatgggctcgaggaacgccatttgcaaaaattacagac
ttgacagatgttcaggaaggcattattgtcagatgcattcaaaggctggatgagactcta
aaagatgtgagaaatgcggcaagaattattggtaacccagtcttacatcaaaaaatggta
gaggcttctgacctgataaaaagggacattatatttgctgccagtctttacacccagaat
gtgtag
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integrated database retrieval system
