Limulus polyphemus (Atlantic horseshoe crab): 106469029
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Entry
106469029 CDS
T08968
Name
(RefSeq) LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106469029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lpol03041
]
106469029
Enzymes [BR:
lpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106469029
Spliceosome [BR:
lpol03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106469029
Complex C
U4/U6.U5 tri-SnRNP related factors
106469029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
nSTAND3
SRP54
T2SSE
TsaE
DUF1299
Motif
Other DBs
NCBI-GeneID:
106469029
NCBI-ProteinID:
XP_013784938
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MDSQVEQWVSDELHELLGLSDKYVAQFLINLAGKSVSVEEFLTKVENTGTLTVDGKLSRF
ARELWNKVPHVEKREKPMRAHERAVQELLQKNQSYQLLEDDEDNDQIPTKKSRTDKKKKR
KHLRKEMLSDDDSNESEPLPEISSKSKISHNMDSDSDFDDTEHERLQDLKERDEFAARLK
DKDKDKTRSIVEKSDKKAFQEAAQRLKLEAEDRKNVVPKLRIESRRKYLEKRKQDKLLEL
EGDIVDEEFLFSDVSITKREKAEVQYKRKILELTKEHERARELEKVERYHIPEEKKEKEP
PKSYVEVDEKERVPNAEQKKWEEERLGSAQMHFGARDAKKQHKEKDYELVMDDAIEFVQA
LKMPGSKGKAESEPELSEYEKKKLSIEETRKSLPIYPFKEDLLQAIKEHQVLIIEGETGS
GKTTQIPQYLYEAGYTKDKKKIGCTQPRRVAAMSVSARVAQEMGVKLGNEVGYSIRFEDC
TSERTVLKYLTDGMLLREFLSEPDLSGYSVLIVDEAHERTLHTDILFGLVKDIARFRPDL
KLLISSATLDAEKFSDFFDGAPIFRIPGRRYPVDIYYTKAPEADYLDACVVTVLQIHVTQ
PLGDILVFLTGQEEIETCQEMLLERTRSLGSKIRELIVLPIYANLPSDMQAKIFEPTPPG
ARKVILATNIAETSLTIDGIIYVIDPGFNKQNSYNARTGMESLVVTPISKASANQRAGRA
GRVAAGKCFRLYTAWAYQHELEDNAIPEIQRVNLGNVVLLLKSLGINDLIHFDFLDPPPH
ETLVLALEQLYALGALNHLGELTKRGRRMAEFPIDPMMSKMILASEQYKCSEEILSIAAM
LSCNSSIFYRPKDKIVHADTARKNFFSAGGDHLTLLNVYNQWMETGYSTQWCFENFIQHR
SMRRARDVREQLEGLMDRVEIELVSNPLDSVNIRKAITAGFFYHTAKLSKSGHYKTIKHQ
QTVMIHPNSSMFEDLPRWLLYHELVFTTKEFMREVIEIECSWLLEVAPHFYKAKDLDDSS
NKKMPKNTGKARAELER
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaagtagaacaatgggtgagtgatgagttgcatgagttgcttggacttagt
gacaaatatgtagctcagtttttgataaatttagcaggaaagagcgtcagtgtagaagaa
tttttaaccaaagttgaaaatacaggaacacttacagttgatggaaaactcagtagattt
gctagagaactttggaataaagttccacatgttgaaaaaagggagaagcccatgcgtgct
catgaacgcgcagtgcaagaacttttgcagaaaaatcaaagttaccagttattagaggat
gatgaagataatgatcaaattcctacaaaaaaatctagaactgacaagaaaaagaaaaga
aaacatttaagaaaagaaatgctgtctgatgatgattcaaatgaaagtgaacctctacct
gagatttctagtaaaagtaaaattagtcataatatggactctgatagtgattttgatgat
acagaacatgagcgtcttcaagacttgaaagaaagagatgaatttgcagctagactgaaa
gataaggataaagataaaacaagaagtattgtggaaaaatctgacaaaaaagcttttcag
gaagcagcacaaagattaaaattagaagctgaagataggaaaaatgttgttcctaaactg
agaattgagtctcgtcgaaaatatttagagaaaagaaaacaagataaactgttagaatta
gaaggagatattgtagatgaagaattccttttctctgatgtcagtataacaaaaagagaa
aaggccgaagtacaatataagaggaaaatattagaacttacaaaagagcatgaaagggct
cgagaattggaaaaagttgagagatatcatattccagaagagaagaaagagaaagaacct
ccaaaaagttatgttgaagttgatgaaaaagaacgagttcctaatgcagaacaaaagaaa
tgggaagaagaaagactaggcagtgcacaaatgcattttggagctcgagatgccaagaaa
caacacaaggaaaaagattatgaattagtaatggatgatgcaattgaatttgttcaagca
ttaaaaatgccaggatcaaaagggaaagctgagtctgaaccagagttgtctgagtacgag
aagaaaaagttaagtatagaagaaacaagaaaaagtcttccaatttacccatttaaagag
gatttgttacaagccataaaagaacatcaagttctaataattgagggtgaaacaggttct
ggtaaaacaacccaaattcctcaatacctgtatgaggcaggatatacaaaagacaagaaa
aaaataggctgtactcagccaagaagagtagctgctatgagcgtttctgcccgtgttgcc
caagaaatgggtgttaaacttggtaatgaagttggatatagtataaggtttgaagactgt
acatctgaaagaacagttctgaaatatttaactgatggaatgttattacgagaatttctc
tcagagccagacctgtctggttacagtgtgttaatagttgatgaagctcatgaaaggact
cttcatacagatattttgtttgggcttgttaaagatattgcccggtttagaccagatttg
aagcttttaatttctagtgcaacacttgatgcagaaaaattttcagacttctttgatggt
gctccaatttttcgaataccaggacgaagatatccagttgatatttactataccaaagct
ccagaggcagactatttggatgcttgtgtagtaactgtgttgcaaatacatgttacacaa
cctttgggtgatattcttgtatttttgactggtcaagaagaaattgaaacttgccaagaa
atgttattagaaagaacccgaagcttaggctctaaaattcgggaacttatagttcttcca
atttatgcaaatctaccatctgatatgcaagctaagatatttgaaccaacaccacctggt
gccaggaaagttattctagccacaaatattgcagaaacatcattgacaatagatgggata
atatacgtaattgatcctggttttaacaaacagaacagttataatgctcgtacaggcatg
gaatcattagtagttacaccaatatctaaagcttcagctaatcaacgggctgggcgtgca
ggccgggtagcagcaggaaagtgctttaggctctatactgcatgggcctatcagcatgaa
ttggaagataatgctattcctgagatccagcgtgtgaatcttggtaatgttgttttgttg
ttgaaatcacttggtatcaatgatctcattcattttgattttcttgatcctccccctcat
gaaactcttgtgctagcattggaacagttgtatgctcttggtgcccttaaccaccttggt
gaattgacaaagcgagggagacgtatggcagaatttcctattgaccctatgatgtcgaaa
atgatattagcctctgaacagtacaaatgctcagaagaaattctctcaattgcagcaatg
ttgtcttgtaacagttcaatcttctatcgcccaaaagacaaaatagttcatgccgatact
gctagaaaaaacttcttcagtgcaggtggagatcatttgacattattgaatgtttacaac
cagtggatggaaacaggttattcaacgcaatggtgctttgagaactttattcaacatcgg
tctatgcgaagggcaagggatgtccgagaacaacttgaaggtttgatggatcgcgtggag
atagaacttgtctctaacccactggactcggtgaatatcagaaaggctataacagcagga
ttcttctatcatacagcaaagttgagtaagagtggccactataagactattaaacaccaa
cagactgtgatgattcatcctaatagctcaatgtttgaagacttacctcgctggctgtta
tatcatgaacttgtctttacaaccaaggagtttatgagagaagtgattgaaattgaatgt
tcttggctccttgaagtggccccacatttttacaaagcaaaagatttggatgacagttca
aataaaaaaatgccaaaaaacaccggcaaggctcgagctgagttggaaaggtga
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