Limulus polyphemus (Atlantic horseshoe crab): 106471051
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Entry
106471051 CDS
T08968
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03013
Nucleocytoplasmic transport
lpol03015
mRNA surveillance pathway
lpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106471051
09122 Translation
03013 Nucleocytoplasmic transport
106471051
03015 mRNA surveillance pathway
106471051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106471051
03041 Spliceosome [BR:
lpol03041
]
106471051
Enzymes [BR:
lpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106471051
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106471051
Spliceosome [BR:
lpol03041
]
Complex C
Other components
EJC/TREX
106471051
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106471051
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106471051
NCBI-ProteinID:
XP_013787089
UniProt:
A0ABM1BR72
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MAENDTELLDYEEEEEQEQTTNEIVAETKKPTGGYVSIHSSGFRDFLLKPELLRAIVDCG
FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDNQVSVIVMCHTRE
LAFQISKEYERFSKYMPTIKVGVFFGGMNIANDEKVLKTNCPHIVVGTPGRILALVRTKK
LNLRQVKHFILDECDKMLEQLDMRRDVQEIFRSTPHDKQVMMFSATLSKEIRPVCKKFMQ
DPMEVYVDDEAKLTLHGLQQHYVKLNDNEKNRKLFELLDVLEFNQVVIFVRSVQRCMALA
QLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFHKRILVATNLFGRGMDIERVNIVFNYDM
PENSDTYLHRVARAGRFGTKGLAITFVSDEEDAKILNDVQDRFDVNISVLPDEIDISSYS
KLVCFYYSIWICVCICMLKIYVCAFLTTKEQDCVLYSIM
NT seq
1379 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaatgataccgaacttttggattacgaagaggaagaggaacaggagcaaaca
accaatgaaatagtagcagaaacaaagaaaccaactggtggttatgtatccatccacagc
tcagggtttagagatttcttattgaaacctgaacttttaagagctattgtagattgtgga
tttgagcatccttcagaagttcaacatgagtgtattccacaagcaatattaggaatggat
attttatgtcaagccaagtctggtatgggaaagactgctgtgtttgtactggccacactt
caacagttggatcctgtggacaaccaagtttctgtaattgtaatgtgtcacaccagagaa
ctggctttccagatttctaaagaatacgagcggttttctaaatacatgcctaccatcaaa
gtaggagttttctttggaggaatgaacattgccaatgatgaaaaggttctcaagactaac
tgtccccacatagttgttggaactcctggtcgcattttagccctggtgcgcaccaagaag
ctgaacctcagacaagtgaagcatttcatcttggacgagtgtgataagatgctggaacaa
ctggacatgagacgagatgtccaggaaatatttcgaagcacccctcatgacaagcaagtg
atgatgttcagtgccaccttaagcaaagagatacgtccagtgtgcaagaagtttatgcaa
gatccaatggaagtttatgttgacgatgaagcaaaactgacactccacggtctccaacaa
cactatgttaaattgaatgacaatgaaaaaaatcgtaaactatttgagttgctggatgtg
ctcgagttcaaccaggtagtgatctttgttaggtcagttcaaaggtgtatggccctggcc
cagttgttggttgaacaaaactttcctgctattgctatacacagagccatgacccaggaa
gagagattatctcgatatcagcagtttaaagatttccacaaaagaattttggttgcaacc
aatttgtttggccgtgggatggacatagaacgtgtgaacattgtttttaactacgatatg
ccagaaaactctgatacgtaccttcacagagtcgcacgtgcaggaagatttggtactaaa
ggtttggccattacctttgtttctgatgaagaagatgccaagatattaaatgacgtacaa
gacagatttgatgtgaatatatctgtactaccagatgaaattgacatttcttcatacagt
aagttggtttgtttttactatagtatctggatatgtgtgtgtatctgtatgttaaaaata
tatgtttgtgctttcttaaccactaaagaacaagattgtgtgttgtattctataatgaa
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