Limulus polyphemus (Atlantic horseshoe crab): 106471512
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Entry
106471512 CDS
T08968
Name
(RefSeq) ATP-dependent RNA helicase DDX39A-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03013
Nucleocytoplasmic transport
lpol03015
mRNA surveillance pathway
lpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106471512
09122 Translation
03013 Nucleocytoplasmic transport
106471512
03015 mRNA surveillance pathway
106471512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106471512
03041 Spliceosome [BR:
lpol03041
]
106471512
Enzymes [BR:
lpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106471512
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106471512
Spliceosome [BR:
lpol03041
]
Complex C
Other components
EJC/TREX
106471512
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106471512
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
106471512
NCBI-ProteinID:
XP_013787568
UniProt:
A0ABM1BS24
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MAENDTELLDYEEEEEQEQPTNDTVVETKKPTGGYVSIHSSGFRDFLLKPELLRAIVDCG
FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDSQVSVLVMCHTRE
LAFQISKEYERFSKYMPTIKVGVFFGGMNIANDEKVLKTNCPHIVVGTPGRILALVRNKK
LNLRQVKHFILDECDKMLEQLGKIFLLIIYCKFEKDTLFPSLPQSLKYSMLFCSCRSCDV
FVQPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVVIFVRSVQRCMA
LAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPENSDTYLHRVARAGRFGTKGLAITFVSDEEDAKILNDVQDRFDVNISELPNEIDISS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaacgatactgaactcctggactacgaagaggaggaagaacaggaacaacca
accaatgatacggtagtagaaacaaagaaaccaactggtggctatgtatccattcacagc
tctgggttcagagattttttattgaaacctgaactcttaagagctattgttgattgtgga
tttgaacatccttcagaagttcaacatgagtgtatcccacaagcaatattaggaatggat
attttatgtcaagccaaatctggtatgggaaagactgctgttttcgtgctggccacgctt
caacagttagatcctgttgacagtcaggtgtctgttcttgtaatgtgtcacaccagagaa
ctggctttccagatttctaaagaatacgagcggttttctaagtacatgcctaccatcaaa
gtaggggttttctttggaggaatgaacattgccaatgacgagaaggtcctgaagactaac
tgtccccacatagttgttggaactcctggccgcattttagccctggtgcgtaacaaaaaa
ctgaacctgagacaagtgaagcatttcatcttggatgaatgtgataagatgctggaacaa
ttgggtaagatatttttgttgattatttactgtaagtttgagaaagacactttatttcca
tcattacctcagtctttaaagtattccatgttattttgttcctgtcgttcatgtgatgtt
tttgtacagccaatggaagtttatgttgatgatgaggctaaactgacactccacggtcta
caacaacattatgttaagttgaaagacaacgagaaaaaccgtaaattatttgagttactg
gatgtgctcgagttcaaccaggttgtaatctttgtgagatcggtacagaggtgtatggct
ctggcccagttattagttgagcaaaactttcctgcgattgctattcacagagctatgact
caggaagaaaggttatcccgatatcagcaatttaaggacttccagaaacgaatcttggtt
gcaactaatctttttggccgtggcatggatattgaacgtgtcaatattgttttcaattat
gacatgccagaaaactctgatacataccttcatagagttgcacgtgcaggaaggtttggt
actaaaggtttagccattacctttgtatctgatgaggaggatgccaagatactgaatgat
gtacaggatagatttgatgtgaatatctctgaattgccaaatgaaattgacatttcttca
tacattgaaggacgataa
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