Limulus polyphemus (Atlantic horseshoe crab): 106473801
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Entry
106473801 CDS
T08968
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106473801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpol03021
]
106473801
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106473801
Transcription machinery [BR:
lpol03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106473801
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106473801
U7-dependent histone pre-mRNA processing factors
106473801
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Gp58
DUF4457
Motif
Other DBs
NCBI-GeneID:
106473801
NCBI-ProteinID:
XP_013789930
UniProt:
A0ABM1BWC2
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MATVSKRKADSQVPPEESDLLVIRPLGAGQEVGRSCVILEFKGKRIMMDCGIHPGLSGMD
ALPFVDLIEADEVDLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADYI
KVSNIGTEQMLYSEADLEASMEKIETINFHEEKEVSGVRFWCYNAGHVLGAAMFMIEIAG
VKVLYTGDFSRQEDRHLMAAEIPGVHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVN
RGGRCLIPVFALGRAQELLLILDEYWNNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNE
RIRRQIAISNPFVFKHISNLKSIDHFEDVGPCVVMASPGMMQSGLSRELFESWCTDPKNG
VIIAGYCVEGTLAKHILSEPEEITTMTGQKLQLKMSVDYISFSAHTDYQQTSEFIRAMKP
PHLILVHGEQNEMGRLKSAIIREYEDDVETNIEVHNPRNTQSVELYFRGEKTAKVMGSLA
VDPPQQGHRLSGVLVKRNFSYHLLAPSDLSKYTDMVRSTVSQRLSLHYTGTLQLLHFFLN
QLSGDVEAIDIQGKKALKVFRKILVIQGVDMVTLEWNASPVNDMYADAVVTVILKADSAG
ISTKVIPPIMKLDKMHFTECLMEMLADMFGDEAVSKIVKGDRLFVTVDGKSVSINLRNQE
VKCEEDEVLQQMVTTAVTKLYNSLTPVKV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgtttctaaacgaaaagcggatagtcaagtgcctccagaagaaagtgatttg
ctggttattagacctttgggagctggacaggaagtaggaagatcatgtgtgattctggaa
ttcaaaggaaaacgaataatgatggactgtggtattcatccgggtttgtcaggtatggac
gccctaccttttgtggacctgattgaagcagatgaggtagatttgttactggtgagccac
tttcatttggaccactgtggcgcattgccatggtttttacaaaaaactacatttaaaggt
agatgtttcatgacacatgcaaccaaagccatataccgttggctcctagcggattatatc
aaggttagtaatatcggtactgaacaaatgctgtactcagaagctgatttagaagcaagt
atggagaaaatagaaactattaattttcacgaagagaaggaagtgagtggtgtgcgattt
tggtgttataatgctggacatgtgcttggagctgcaatgttcatgatagaaattgcagga
gtaaaagttctttacacgggcgacttctcacggcaggaagataggcatcttatggctgca
gagattccaggagtccacccagatgtgttgattatagaatctacctacggtactcacatt
catgaaaaaagagaggaacgtgaagcaaggttcacaggacttgtacatgatatagtaaat
cgtggaggaaggtgcttgatcccagtgtttgccctcggaagagctcaagagttgttactg
atcttagacgagtattggaataaccatcctgaactccatgatattcctatatactatgct
tcatctttagccaaaaaatgcatggcggtatatcagacctatgttaatgccatgaacgag
cgcattcgccgtcagatagccatcagtaacccatttgtgtttaaacacatatcaaacctg
aaaagcatcgatcacttcgaggacgttgggccgtgcgttgtgatggcgagccctggcatg
atgcagagtggtctctccagggaattgtttgaaagttggtgcactgatcccaagaatggt
gttatcattgcaggatattgtgttgaaggaacattggccaaacacattctttcagaacca
gaagagattactactatgactggtcaaaaattacaactcaagatgtcggtggactatatc
tccttttcagctcacacagattatcaacaaaccagtgaattcatccgtgcaatgaaacct
ccacatcttatacttgtacatggagagcagaatgaaatgggaaggttgaagtctgccatc
attcgagaatatgaggatgacgtggaaactaacattgaggtgcataacccaagaaatacc
cagagtgttgaactgtactttcgtggtgagaagacagctaaggttatgggatctcttgca
gtcgatccacctcagcaaggccacagactgtctggagttcttgtgaagagaaactttagt
taccacttgcttgctccatcagacttgtcaaaatacactgatatggttagaagtaccgtc
agtcagaggctgagtttgcactacactggcaccttacagttattacactttttcttgaac
caactctctggagatgtggaagccattgacattcaagggaagaaggctcttaaggtcttt
aggaaaattcttgtcattcagggagttgacatggtgactcttgaatggaatgccagcccc
gtcaatgacatgtatgccgatgctgtcgttacggtcattcttaaagccgacagtgctggc
atttccacaaaagtcattccaccaattatgaagcttgacaagatgcattttaccgagtgc
ttgatggagatgttagccgacatgtttggagatgaggcagttagtaaaattgtgaaagga
gacagattgtttgttactgtggatgggaagagtgtcagcatcaatcttcggaatcaagaa
gtaaaatgcgaggaagatgaagtgttacaacagatggtaacaacggcagttacaaaactt
tacaattctcttacacctgttaaagtttga
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