Limulus polyphemus (Atlantic horseshoe crab): 106474444
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Entry
106474444 CDS
T08968
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpol03016
]
106474444
Enzymes [BR:
lpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
106474444
Transfer RNA biogenesis [BR:
lpol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106474444
Prokaryotic type
tRNA splicing ligases
106474444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
106474444
NCBI-ProteinID:
XP_013790589
UniProt:
A0ABM1BXK5
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MGVRSFNEECSYLEKISSCCWRIKKGFVSNMKVEGLFYVNDYLEKLMFDELRNSCRPGMV
GGFLPGVKQIGNVAALPGIVGKSIGLPDIHSGYGFAIGNMAAFDMSDPQAVVSPGGVGFD
INCGVRLLRTNLMEKDVLPVKEQLAQNMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLNADPSKVSMKAKKRGLPQLGTLGAGNHYAEIQVVDDIYE
KSNASKMGIENKGQICVMIHCGSRGFGHQVATDALLAMEKAMKRDKIEVNDRQLACAHIS
SQEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKIFNSTPDDLDMHMIYDVSHNIAKIE
QHILDGKEKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QETFGTTCHGAGRALSRAKSRRNLDYQDVLDKLAEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcgaagcttcaatgaagaatgcagctacttggaaaagatttcctcctgttgc
tggagaatcaaaaaaggctttgtttccaatatgaaggttgagggtctcttctatgttaat
gactaccttgagaaactaatgtttgatgaattgagaaactcctgtcgacctggaatggtt
ggtggatttctaccaggagtcaaacagattggtaatgttgctgcccttcctggaattgtt
ggtaaatcaattggtttaccagatattcactcaggttatggcttcgctattggaaacatg
gctgccttcgacatgagtgatcctcaagcagtggtgtctcctggtggagtaggttttgat
attaactgtggagtaaggctgctaagaaccaacctcatggaaaaagatgttcttccagtg
aaagagcagctggcccaaaacatgtttgaccacatacctgttggtgtgggttcaaaagga
attattccaatgaatgctagagacttggaggaagctttggaaatgggtatggattggtct
ctacgtgaaggctatgcatgggctgaagacaaggaacattgtgaagaatatgggcgaatg
ttgaatgcagacccatctaaagtgtcaatgaaagcaaaaaaacgaggacttcctcagctg
ggaacattaggagcaggaaaccattatgctgaaattcaagttgtagacgatatttatgaa
aaaagtaatgccagcaaaatgggaattgagaataaaggtcagatttgtgtgatgattcat
tgtggtagcagaggatttggacaccaggtggccacagatgccttgttagccatggaaaaa
gccatgaagcgagacaaaattgaagtaaatgaccgacagttagcatgtgcccacatatct
tcccaagaaggacaggactacctcaagtcaatggcagctgctgcaaactttgcgtgggtt
aatcgcagtagcatgactttcctctgtaggcaggcttttgccaagatcttcaactccacg
ccagatgatctggacatgcatatgatttatgatgtatctcacaatatagctaaaatagaa
caacatattctggatggtaaagagaagacccttctggttcacaggaaaggatcgacccga
gcttttcctccacaccacccactgatccctgtggactatcagttaactggacaaccggta
ttgattggtgggactatgggcacctgtagttatgtgcttactggaacagagcagggaatg
caagagacttttggtaccacatgccatggagcaggaagagctctgtctcgagccaagtcg
cggagaaacctggactaccaagatgttcttgacaagcttgccgagatgggaatttctatc
agggtagcatcaccaaaacttgtgatggaagaagccccggaatcatacaagaatgtgact
gatgttgtgaatacttgtcatgcagctggaatcagcaagaagtgtataaaactaagacct
attgctgtgattaaaggataa
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