Limulus polyphemus (Atlantic horseshoe crab): 106475113
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Entry
106475113 CDS
T08968
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106475113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpol03019
]
106475113
03041 Spliceosome [BR:
lpol03041
]
106475113
Messenger RNA biogenesis [BR:
lpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106475113
Spliceosome [BR:
lpol03041
]
Complex B
Other components
Prp19-related factors
106475113
Complex C
106475113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_12
TPR_15
NRDE-2
TPR_7
TPR_10
PPR
DALR_1
DHR-2_Lobe_A
TPR_1
Motif
Other DBs
NCBI-GeneID:
106475113
NCBI-ProteinID:
XP_013791269
LinkDB
All DBs
Position
Unknown
AA seq
858 aa
AA seq
DB search
MVLEMKSALSSDLVFSEEDLPYEEEILRNPFSVKHWMRYIEFKKDASKQAINVIYERALK
ELPGSYKLWYNYLKLRKNQVKNHCIIDPSYEDVNFAFERALVFMHKMPRIWLDYCQFLID
QCKITRTRRVFDRALRALPITQHHRIWPLYLSFVKKHEIPETAVRVYRRYLKLTPENTEE
YIEYLRSQGRLDEAALKLAELVNNEDFVSKEGKSKHQMWNELCDLISKNPDKVHSLKADS
IIRGGLQRYTDQLGKLWNSLADYYIRSGNFERARDIYEEAIQTVLTVRDFTQVFDAYAQF
EERLISAKMETTVNSNSIEEDDELELELRLARFEDLMDRRPLLLNSVLLRQNPHNVHEWQ
KRVKLLEGKPREIVNVFTEAVQTVDPKLATGKLYQLWVSFAKFYEENGQIEDARVIFEKG
THVAYTKVVDLAAVWCEWAEMELRHENYEGSLKLMEKATAAPPIKVAYNDTTEPVQSRLY
KCLKVWSMYADLEESFGTFKSTKAVYDRIIDLKIATPQIIINYGLFLEENSYFEEAFKAY
EKGIALFKWPNVYDIWKTYLSKFLKRYGGQKLERARDLFEQCLDGCPAKFAKSIYLLYAK
LEEEHGLARHAMAIYDRSTRAVEPDEQFEMFNIYIKKAAEIYGVTYTRQIYEKAIEGLPD
HYAQQMCLRFADLEQKLGEIDRARAIYAHCSQMCDPRTTVDFWQTWKDFEVRHGNEDTVR
EMLRIKRSVQATYNTQVNFMSAQMLNAAAAAAGQIPENLPENSMQQLEAKAKALAQEAQN
DQPHMPGRKDIMFVRGGTNAAEEELAELSKTTNPEEINIDDDFDTDEEENVEEVQVERRS
VPTEVFAGLKKDHDDDDD
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggtactagaaatgaagtcagctttgagttcagatctggtcttcagtgaagaagacctg
ccatatgaagaggagattttaagaaaccctttttctgtaaaacactggatgagatatata
gaatttaagaaagatgcctcaaaacaagccataaatgtaatctatgaaagagctcttaaa
gagttacctggaagctacaagttatggtacaattatctaaaacttaggaaaaaccaagtg
aaaaatcattgcataatagatccatcatatgaagatgtgaattttgcatttgaacgtgcc
cttgtgttcatgcataagatgcctagaatatggcttgattattgtcagtttcttatagat
caatgcaagataacaagaacgcgacgagtttttgatcgtgctttacgtgctcttccgatt
actcagcaccacagaatttggcctctgtacctttcttttgtaaaaaaacatgaaattcca
gaaacagcagtcagagtatacagacgatacttaaagttaactcctgaaaacacagaagag
tacattgaatatctccgttcacagggtcggttggatgaagcagcactcaagttggcagag
ttggttaataatgaagattttgtttcaaaagaggggaagtccaagcaccagatgtggaat
gaattatgtgatctgatatcaaaaaatcctgataaggttcactcattaaaagcagactct
atcattcgtggagggcttcaacggtacactgaccagcttggtaagttatggaactcatta
gcagattactatattcggagtggaaactttgagagagctcgagacatctatgaggaagcc
atccaaacagttttgactgtcagagattttacacaagtttttgatgcctatgctcagttt
gaagaaaggctaatcagtgcaaaaatggaaactacggttaattccaactcaatagaagag
gatgatgagctcgaattagagttaaggctggctcgatttgaagacttaatggataggaga
ccattactgttgaacagtgtgctgcttcgtcagaatcctcataatgttcatgaatggcaa
aaacgtgtaaaacttcttgaagggaaaccaagagaaatagtgaatgttttcactgaggca
gttcagacagtagaccccaagttggccacaggaaaactttatcaactttgggtttcattt
gctaagttttatgaagaaaatgggcaaattgaagatgctagagtcatctttgaaaaagga
actcacgttgcttacactaaagttgtagatttagcagctgtgtggtgtgaatgggcagag
atggaactgagacatgaaaattatgagggttctttaaagctcatggaaaaagcaactgct
gctccacccataaaagttgcatataatgacactacagaacctgtgcagtctcggttatac
aaatgtttaaaagtatggtccatgtatgctgatttagaagagagttttggtacttttaag
tcaactaaagctgtatatgaccgtattattgacctcaaaatagcaacaccccaaatcatc
attaactatggcttgtttcttgaagaaaatagttattttgaagaagcattcaaagcctat
gaaaaaggcattgctctctttaaatggcccaatgtgtatgacatctggaaaacctatctg
tcaaaatttttaaaacgttatggtgggcaaaaattagaacgagctcgagatctttttgag
caatgcttagatggctgtccagccaagtttgcaaaatctatttatttactatatgcgaaa
cttgaagaagaacatggacttgcccgccatgctatggctatttatgacaggtcaacccga
gcagtagaacctgatgaacagtttgagatgttcaacatttacattaagaaagctgccgaa
atctatggagtgacttatacacgccagatatatgagaaagctattgagggattaccagat
cattatgctcaacaaatgtgtttgaggtttgcagatcttgagcaaaaacttggggagata
gatcgtgcaagagccatttatgctcactgtagccagatgtgcgaccccagaacaactgta
gacttctggcagacttggaaagactttgaggttcgtcacggcaatgaagacactgtgaga
gaaatgttgcgcattaagagaagtgtccaagcaacctataacactcaggtgaacttcatg
tctgcacagatgctgaatgctgcagctgctgctgctggacaaattcctgagaacttgcca
gaaaacagtatgcagcagcttgaggctaaagctaaggcacttgcccaggaagcccaaaat
gatcagccacatatgcctggaagaaaggatataatgtttgtccgtggaggaacaaatgct
gctgaggaggagcttgcagaattgagtaaaacaaccaatcctgaagaaattaacattgat
gatgattttgatacagatgaagaagagaatgtggaagaagttcaagtagaaagaagatct
gttccaacagaagtgtttgctggtttaaagaaagatcatgatgatgatgatgattaa
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