Limosilactobacillus pontis: LP475_01345
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Entry
LP475_01345 CDS
T07022
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpon
Limosilactobacillus pontis
Pathway
lpon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP475_01345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpon03019
]
LP475_01345
03009 Ribosome biogenesis [BR:
lpon03009
]
LP475_01345
Enzymes [BR:
lpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LP475_01345
Messenger RNA biogenesis [BR:
lpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LP475_01345
Ribosome biogenesis [BR:
lpon03009
]
Prokaryotic type
rRNA helicases
LP475_01345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
PRR20
Motif
Other DBs
NCBI-ProteinID:
QFV00468
LinkDB
All DBs
Position
291547..293031
Genome browser
AA seq
494 aa
AA seq
DB search
MKFSELGLSQSLLRAIKRSGYEEATPIQEQTIPMVLDGQDVIGQAQTGTGKTAAFSLPII
EHVNTKDPDIQALVISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHP
QILVGTPGRLRDHLNRHTVKLDNIQTLVLDEADEMLNMGFLDDIEAIINQTPKDRQTLLF
SATMPPEIKKIGVQFMTDPKMVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPE
LTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDQRTKIMRQFKNGQLDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGMSLTFVTPNEMDYLHEIEKLTRV
RMLPLKPPTAEEAFRGQVASAFNDIDELVAQDTTDRYKDAAAKLLETHDATDLVAALLNN
MTKEAASDVPVKITPARPLSRRNRHNHQRGNGRGNGHYRRHRDNHGRRSNYRSHRNNDHH
GNSHSFSIRHRKED
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttagcgaattgggcttatcgcagagcctattgagggcaatcaagcggagcggt
tacgaagaagccactccgattcaggaacagacgattccaatggtactggatggtcaagac
gtgattggccaggcccagactgggaccgggaagacggcggcgtttagcctgccgatcatc
gaacacgtcaacaccaaggatccggatatccaggccctcgtgatttcaccgacccgggag
ttggccatccagacccaggaggagctctaccggcttggtaaggacaaacatgtccgggtc
caggtcgtctacggtggggctgacattcggcgtcagatcaagagcctgaagcagcacccg
caaatcctggtcggaacgccagggcggctgcgcgaccacctgaaccggcataccgtcaag
ctggacaacatccagaccctggtgctggacgaggccgacgagatgctcaacatgggcttt
ctcgacgatatcgaggcaattatcaatcagacaccgaaggaccgccagaccctgctcttc
tcggccacgatgccaccggagatcaagaagattggggtccagtttatgaccgaccccaag
atggttcgaatcaaggccaaggaactgaccaccgacctggtcgatcagtactatgtccgg
gcccgtgattacgagaaatttgacatcatgacgcggttaattgacgtccaggatccggag
ctgacgatcgtcttcggtcggaccaagcgtcgggtcgacgagctctcccggggtttggtt
gcccggggctataacgcggccggtatccacggtgacctgagtcaggatcagcggaccaag
atcatgcgtcagttcaagaacggccagcttgatatcctggtagcaaccgacgtggcggcc
cggggattggacatctctggcgtgacccacgtttacaactacgacattccgtctgacccc
gacagttacgttcaccggatcggtcggacgggccgggccggccaccatgggatgtcattg
acctttgtaaccccgaacgagatggactacctccacgagatcgagaagctgacccgggtc
cggatgctaccgctgaagccaccgacggctgaggaggccttccgcggtcaggttgccagc
gccttcaacgacattgacgaactggttgcccaggacactaccgaccgttacaaggatgcg
gcagccaagctcctggagacccacgacgccaccgacctggttgcggccctactcaataac
atgaccaaggaggccgccagtgacgtgccggtcaagatcacgccagcgcggcccctgtca
cggcgtaaccgtcacaatcaccagcggggcaatggccgggggaacggccactaccgtcgt
caccgcgacaaccacggccggcggagtaattaccggtcccaccggaacaacgaccaccat
ggcaacagtcattccttcagtattcgtcaccgtaaggaagactag
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