Limosilactobacillus pontis: LP475_03400
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Entry
LP475_03400 CDS
T07022
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpon
Limosilactobacillus pontis
Pathway
lpon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LP475_03400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpon03019
]
LP475_03400
Messenger RNA biogenesis [BR:
lpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LP475_03400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QFV00821
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Position
688347..690155
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AA seq
602 aa
AA seq
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MSNSIKIIPFGGVRENGKNMYAVEVGKQIFILDCGLKYPENELMGIDVVIPDWEYLREHK
DQVVGVFLTHGHADSIGALPYFLMDFNVPVFGSEMTIALAKLAVKGHKEVKKFNDFHVVD
AATTIDFNDVTVSFFQTTHTIPETLGVVIETSDGNIVYTGDFKFDQTATQGYQTDLARLA
EIGSQGVLALLSDSAGAGITGISAREKDIGEYIKETFKYQNGRIIVASVASNIMRVQQII
NAAVAVDRKLVLSGKDIEQIINTAMSLGKLKLPKGLLISMKEADKLEPNQVIILETGKMG
EPIKSLQQIASGANPKLHLTDTDLVFVTTTPSYAQETEVQKTKDMIYRTGAEVKFISDDL
NPSGHANQNDEQLMLNFMKPQYFIPIQGEYRLLDRHAQLAEEVGIPADHIFIASKGDVLT
YKNGEFHVGDHIDVSNTMIDGTGIGDIGNIVLRDRRVLSEDGIFVVVATIDRKKKKIVAR
PQITSRGFVFVKTNRQLMKQSADLVEKVVQENLDQKEFDWSHLKQDVREKLNRFLFDQTK
RHPVILPVIMEINQHAKRKNKGNNNGEAKKQGNGQGQKEKKQGHHRNGRGRKHEKQVAKA
KQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacagcattaagattattccgtttggcggggtccgcgaaaacggtaagaatatg
tacgcagttgaagttggtaagcagatcttcattctggattgtgggctgaagtaccccgaa
aatgaactgatggggattgacgtggtgattccggattgggaataccttcgcgaacacaag
gatcaagtcgtcggggtcttcctgacgcacggccatgccgactcgatcggggccttaccg
tactttctgatggacttcaacgtcccggtcttcggtagtgagatgacgattgccctggct
aagctggcggtgaagggtcacaaggaggttaagaagttcaacgacttccacgttgtcgac
gccgccaccacgatcgacttcaatgacgtcacggtctcgttcttccagaccacccacacg
attcctgagacgctgggcgtggtgatcgagactagtgatggcaacatcgtctacaccggc
gacttcaagtttgaccaaacggccacccagggttaccaaacggacctggcgcggctggcc
gagatcggttcgcaaggcgtactggccctgttaagtgactcggcgggggctggtatcact
ggcatctcagcccgggaaaaggatattggtgaatacatcaaggaaaccttcaagtaccaa
aacggccggattatcgtggccagtgtcgcttccaacatcatgcgggttcagcagatcatc
aacgctgccgtagcggttgatcgtaagttggttctgtctggtaaggacatcgagcagatc
attaatacggcgatgagcctaggtaagctaaagttgccgaagggactcttgattagcatg
aaagaggccgataagctggagccaaatcaggtcatcatcctggagaccgggaagatgggc
gagccaatcaaatcccttcagcagattgccagtggtgccaatccgaagctccacctgacc
gataccgacctggtctttgtcacgaccactccttcttatgctcaggagacggaggttcaa
aagaccaaggacatgatctaccggaccggggccgaggtcaagttcatctcggacgatctc
aacccttctggccatgccaaccagaatgacgagcaactgatgctcaacttcatgaagccc
cagtacttcatccccatccagggtgagtaccggctcttggaccgtcacgcccagctggcc
gaggaggttggtattccagctgaccacatcttcattgccagcaagggggatgtccttacc
tataagaatggtgagttccacgtcggcgaccatatcgacgtcagcaacacgatgatcgac
ggtaccgggatcggtgacattggcaacatcgtcctccgtgatcggcgggttctgtctgag
gacgggatcttcgtcgtggtcgccaccatcgatcggaaaaagaagaagatcgttgcccga
ccgcagatcacatctcgggggttcgtctttgtcaagactaaccgtcaactgatgaagcag
agtgccgacctggttgagaaggtcgttcaggagaacctcgaccagaaggagttcgactgg
agccacctcaagcaggacgttcgcgagaaattgaaccgcttcctctttgatcagaccaag
cgtcacccggttatcctgccggtgatcatggagatcaaccagcacgctaagcgcaagaac
aagggcaataacaatggcgaggccaagaagcagggtaatggtcagggccaaaaggaaaag
aaacagggccatcaccgcaatggtcgtggccgtaaacatgagaagcaggttgccaaggcc
aagcaataa
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