Lonsdalea populi: I6N93_00895
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Entry
I6N93_00895 CDS
T06954
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lpop
Lonsdalea populi
Pathway
lpop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6N93_00895 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpop03019
]
I6N93_00895 (rhlB)
Enzymes [BR:
lpop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6N93_00895 (rhlB)
Messenger RNA biogenesis [BR:
lpop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6N93_00895 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPQ24408
LinkDB
All DBs
Position
complement(195149..196438)
Genome browser
AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALTLPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPTSAERETNQPRALIMAPTRELAVQIHADAEALAKATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQDYVNLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPATDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRLRILE
DFTHGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLA
CEEYALNLPAIEEYTGHRIPVSKYNSEALLSDFPPPKRLTRPRSASGPRRQNSQRRSSSP
RHNNRRRQD
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaaccgaacagaagttttccgacttcgcactgcacccgcaggtt
atagaagcgcttgaaagtaaagggtttcataactgcacgccgattcaggcgctgacatta
ccgctgacgttgtcaggccgtgatgtcgcaggtcaggcgcaaaccggtaccggcaagacg
ctggcgtttctggcgtctactttccattatctgctttcccatcccacttcggctgaacgc
gaaaccaaccagcctcgtgcgctgattatggcgccgacgcgtgaactcgccgtgcagatc
catgcagacgccgaagcgctggctaaagccaccggattgaaactgggcctggcctatggc
ggcgacggctacgacaaacagctgaaagtgctggagagcggcgtcgatattctgatcggc
accacaggtcgtctgatcgactatgcgaagcaggactacgttaatctgggcgcgattcag
gttgtggtgctggatgaagcggatcgtatgtacgatctgggcttcattaaggatatccgt
tggctgttccgacgcatgccggccaccgatcagcgtctcaacatgctgttttccgccacg
ctgtcctatcgtgtccgcgaactcgctttcgagcagatgaacaacgcggaatatgtggaa
gtggagccggaacagaaaaccggtcaccggatcaaagaagagctgttctatccgtctaac
gaagagaagatgcgtctgctgcagactctcatcgaggaagagtggccggatcgttgcatt
atcttcgccaataccaagcaccgttgcgaagacgtttggggtcatctggccgccgatggt
caccgcgtcggactgctgaccggtgatgtgccgcagaaaaaacgcctgcgcattctggaa
gatttcacccacggcaatatcgacattctggttgccaccgatgtcgccgcgcgcggcctg
catattccgctggttacgcacgtcttcaactacgacctgccggatgattgcgaagattac
gttcaccgtatcggtcgtaccggccgtgctggcgaaagcggctgttccatcagcctggcc
tgcgaagagtacgcgctgaatctgcctgcgattgaagagtataccgggcaccgtattccg
gtcagcaagtacaacagcgaagcgttgctgagtgattttccgcctccgaaacgcctgacg
cgtccgcgttctgcttccggtccgcgccgccagaattcgcagcgccgcagcagtagtcct
cgtcacaacaaccgtagacggcaggattga
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