Lonsdalea populi: I6N93_00905
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Entry
I6N93_00905 CDS
T06954
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lpop
Lonsdalea populi
Pathway
lpop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6N93_00905 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpop03021
]
I6N93_00905 (rho)
03019 Messenger RNA biogenesis [BR:
lpop03019
]
I6N93_00905 (rho)
Transcription machinery [BR:
lpop03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I6N93_00905 (rho)
Messenger RNA biogenesis [BR:
lpop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I6N93_00905 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QPQ24410
LinkDB
All DBs
Position
197320..198579
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLASSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaatcactcttggcgaaaat
atggggctggaaaacctagcccgtatgcgtaaacaggacatcattttcgccatactgaag
cagcatgcaaagagtggcgaagatattttcggcgatggtgtgctggagatattgcaggat
gggtttggttttcttcgttccgccgacagctcctacctcgccggtcctgatgacatctac
gtttcccccagccaaatccgtcgttttaatctccgtactggcgataccatttccggtaaa
attcgcccccccaaagaaggcgaacgctacttcgctctgctgaaagttaatgaagtcaac
tacgacaaaccggaaaatgcccgcagtaagattctgttcgaaaacctgacgccactgcat
gccaattcgcgtctgcgtatggaacgcggcaacggttcgactgaagatttgacggctcgc
gtgctggatttggcttctccgatcggccgtggtcagcgtggcctgattgtggcgccgccg
aaagcgggtaaaaccatgctgctgcagaatatcgcgcagagcatcgcctacaatcacccg
gactgcgtgctgatggtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggcgaagttatcgcttccacctttgacgaaccggcatctcgccacgtt
caggttgccgaaatggtgattgagaaagcaaaacgtctggttgagcacaagaaagacgtc
atcattctgctggactccattacccgtctggctcgcgcctacaacacggtcgttccgtcc
tccggtaaagtgttgaccggtggggtagacgccaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcacgtaacgttgaggaaggcgggagcctgaccatcatcgccaccgcgctg
gttgataccggttcgaagatggatgaagtgatttacgaagagtttaaaggcacgggtaac
atggaactgcacctctctcgtaaaatcgcagaaaaacgcgtcttcccggccattgactac
aaccgttccggtacgcgtaaagaagagctgcttgccagctccgaggaactgcagaaaatg
tggattcttcgtaagatcatccatccgatgggtgagatcgacgccatggaattcctgatc
aacaagctggccatgacgaagaccaacgatgagttcttcgacatgatgaaacgttcgtaa
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