KEGG   Lonsdalea populi: I6N93_02610
Entry
I6N93_02610       CDS       T06954                                 
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
lpop  Lonsdalea populi
Pathway
lpop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lpop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    I6N93_02610 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lpop03400]
    I6N93_02610 (uvrA)
DNA repair and recombination proteins [BR:lpop03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     I6N93_02610 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      I6N93_02610 (uvrA)
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_29 AAA_16 nSTAND1 RsgA_GTPase DnaJ_CXXCXGXG AAA_25 AAA_23 nSTAND3 NACHT Viral_helicase1 cobW DUF1924 BCA_ABC_TP_C
Other DBs
NCBI-ProteinID: QPQ24723
LinkDB
Position
559143..561974
AA seq 943 aa
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC
PEHSVPLDAQTVSQMVDNVLAQPEDKRLMLLAPIVKDRKGEHTKTLENLATQGYIRARID
GEVCDLSDPPQLELQKKHTIEVIVDRFKVRSDLAQRLAESFETALELSGGSAVVADMDDS
NAPELLFSANFACPICGYSMHEMEPRMFSFNNPAGACPTCDGLGVQQFFDPSRVIQNQEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYEFDIDAPFDSLSADIQKVVLYGSGKQNIEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRPCASCHGTRLREEARH
VYVAETTLPHISDMSIGQALSFFQNIELSGQRAKIAEKVLKEIGDRLRFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVIAEGTVDEIMAVPESLTGQYLSGQRKIAV
PMERVSADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPLAQR
QLNGATIAESAPYRDIQGLDHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
SRTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGHRYNRETLEIKY
KGKSIHDVLDMTIEDAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPEIVAECEASHTARFLKPLLARD
NT seq 2832 nt   +upstreamnt  +downstreamnt
atggataatatcgaagttcgtggtgcccgtactcataatctcaaaaatatcaatctgata
atcccacgcgataagctgattgtggtgacgggattatccggatccggaaagtcatcgctg
gcttttgacaccctctacgccgaggggcagcgacgttacgtggaatcgctttcggcgtat
gcccggcagtttttgtccttgatggaaaaaccggacgtcgatcatatcgaagggttgtcg
ccggctatctccattgaacagaagtcgacgtctcataacccgcgctccaccgtcggcacc
atcactgaaattcatgattacctgcgcctgctgtatgcccgcgtcggggagccgcgctgc
ccggaacatagcgttccgctggatgcgcagaccgtgagtcagatggtggataatgtgctg
gcgcagccggaagacaagcggctgatgctgctggcgccgatcgtaaaagatcgcaagggc
gagcacaccaaaacgctggagaatctggcgacgcagggttacatccgcgcacggatcgac
ggcgaggtgtgcgatctgtccgatccgccgcagctggagctgcagaagaagcataccatc
gaggtcatcgtcgaccgcttcaaggtgcgcagcgatctggcccagcggctggcggagtcg
tttgagaccgcgctggagctttccggcggcagcgccgttgttgccgacatggatgacagc
aacgcgcctgaactgctgttctccgccaacttcgcctgtccaatctgcggctacagcatg
catgagatggaaccgcgcatgttctcctttaataaccccgccggcgcgtgtccgacttgc
gatgggttaggcgtacaacaatttttcgacccgtcccgcgtgattcagaaccaggagttg
tcgctggcgggtggtgcgattcgtggatgggaccgccgtaatttctattacttccagatg
ctgcggtcgctcgcggaacactacgaatttgatatcgatgcgcctttcgacagcctgagc
gcagatattcagaaggtcgtgctctatggctccggcaagcagaatatcgaattcaaatac
atcaacgatcgcggcgatacctcggtgcggcgtcatccgttcgagggcgtgctgcacaac
atggagcgccgctataaggaaacggaatccacggcggtgcgcgaagagctggcgaagttt
atcagcaaccgcccctgcgccagctgtcacggcacacgcctgcgcgaagaggctcgccat
gtgtacgtggctgaaacgacgttgccgcacatttccgacatgagcatcggtcaggcgctg
agctttttccagaatattgaactgagcggccagcgcgcgaagatcgccgaaaaggtgttg
aaagagattggcgatcgcttgcgcttcctggtgaacgtcggtttgaattacctgtcgctg
tcccgttcggcggaaacgctgtccggcggcgaagcgcagcgcattcgtctggccagccag
atcggcgcgggattggtcggcgtaatgtatgtgctggacgaaccgtccattggcctgcat
cagcgggataacgaacgtctgttggaaacgctgattcacctgcgcaatctcggcaatacg
gtcatcgtggtcgagcatgatgaagacgcgatccgcgccgccgatcacgtgatcgatatc
ggtcccggcgccggggtacacggcggcgaggtgatcgccgaaggtaccgtcgatgaaatc
atggctgtaccggaatccctcaccggacagtacctcagcggtcagcggaaaatcgcggtg
ccgatggaacgcgtgtctgcggatcccaccaaagtgctcaaactcatcggtgccaagggc
aataacctcaaagacgtgacgctgacgctaccggtagggctgtttacctgtatcaccggg
gtatccggttcgggcaagtctacgctgatcaacgatacgttgtttccgctggcccagcgc
cagctcaatggcgccaccatcgctgaatccgcgccgtatcgtgatattcagggactggat
cacttcgacaaagtgatcgatatcgatcaaagccccatcggtcggacaccgcgctccaac
ccggcgacctacaccggcgtgtttacgccgatccgcgagctgttcgccggcgtgccggaa
tcacgcacccgcggctacaaccccggccgtttcagcttcaacgtgcggggcggacgctgc
gaggcctgtcagggcgacggcgtcatcaaggtcgagatgcactttctgccggatatctac
gtgccatgcgatcagtgcaaaggccaccgctacaaccgtgaaacgctggagatcaaatac
aaaggcaaaagcatacacgacgtgctggatatgacgattgaagatgcccgtgagttcttt
gacgccattccggcgctggcgcgtaagctgcaaacgctgatcgatgtcggcctgtcctac
attcgcttgggccagtcggccacgacgctctcgggcggagaggcgcaacgcgtcaagctg
gcgcgcgaactgtctaagcgcggcaccggacagacgctgtacattctggatgaaccgacc
accgggctgcatttcgccgatatccaacagctgctggccgtcctgcatcagctgcgcgat
cagggcaataccattgtcgtcatcgagcataatctggatgtgattaaaacggccgactgg
attgtggatttggggccggaaggcggcagcggcggcggtgaaattctggtcagcggtacg
ccggaaatcgttgcggagtgcgaggcctcgcacaccgcgcgattcctcaaaccactactg
gcgcgggactga

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