Lonsdalea populi: I6N93_03005
Help
Entry
I6N93_03005 CDS
T06954
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lpop
Lonsdalea populi
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpop03009
]
I6N93_03005 (rlmD)
Enzymes [BR:
lpop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I6N93_03005 (rlmD)
Ribosome biogenesis [BR:
lpop03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I6N93_03005 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
RrnaAD
MTS
Cons_hypoth95
Methyltransf_15
Methyltransf_ANTKMT
Methyltransf_11
Methyltransf_23
Methyltransf_4
PabTrmU54_TRAM_dom
PrmA
CMAS
Motif
Other DBs
NCBI-ProteinID:
QPQ24796
LinkDB
All DBs
Position
648795..650123
Genome browser
AA seq
442 aa
AA seq
DB search
MAQFYSPKRRVTTRQRITVSVNDLDPFGQGVARHQGKTIFIAGVLPGEQAEVQVTEDKKQ
FSRASLKQLLSKSQERVDPRCPHFNVCGGCQQQHASQALQERSKSRALMRLMERETGATV
PSPDVISGPAYAYRRRARLGLYFQAKSQRLLMGYRQAASHDLVDVRHCPILCSELEALLI
PLRECLSGLQAKRRFGHVELVLADEGPLVILRHLDPLSAADRQALIALARARSISLFLAG
ETDALECLHGEMPTYRIDDLSLAFSPRDFIQVNDVINRQMVSQALSWLDVQPQDRVLDLF
CGMGNFTLPLARRAAEVVGVEGVPALVAKGQENARCNGLSNAVFFHHNLEEDVTRQPWAS
QGFNKIVLDPARAGAPGVMSHIVKLAPERVVYISCNPTTLARDSKVLLAAGYRLARIAML
DMFPHTGHLESMALFLPGDGGR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactccccaaaacggcgtgtgacgacccgtcaacgcatcaccgtgtcg
gtcaacgatctcgacccgttcggtcaaggcgtggcgcgtcaccaggggaaaacgattttc
atcgccggcgtattgccgggggaacaggccgaagtccaggtgaccgaggataaaaaacag
ttttcccgggcgagcctgaagcagctgctgagcaagagccaagagcgagttgacccacgc
tgcccgcatttcaacgtctgcggcggctgtcagcagcaacatgccagtcaggcattgcag
gagcgcagtaaatcccgtgcgctgatgcggttgatggagagggaaactggcgctaccgtc
ccctccccggacgtgattagcggcccggcctatgcctaccgacgccgcgcccggctcggg
ttatactttcaggctaaatcacagcgattgctgatggggtatcgtcaggcggcctcgcac
gatctggtggatgtgcgccactgtccgatactgtgttccgagctggaagcgttgctgatt
cccctgcgcgagtgcctcagcggccttcaggccaaaagacgctttgggcatgtcgagctg
gtgctcgccgacgaagggccgctggtgattctgcgtcatcttgatccgcttagcgccgca
gaccgccaggcgcttatcgcgctggcgcgcgctcggtcgatatcgctgtttctcgccggt
gagacagacgcccttgagtgtctgcacggcgaaatgccgacgtatcgaattgacgatctt
tccctggcgttcagtccgcgggacttcattcaggtgaacgacgtcatcaatcggcaaatg
gtcagtcaggccttgtcctggcttgatgtgcagccgcaggaccgcgtgcttgacctgttt
tgcggcatgggcaattttacgctgccgctggcccggcgggccgccgaagtcgtcggcgtg
gaaggcgtgccggcgttggtggctaagggacaggaaaatgcccgatgcaacggtttatcc
aacgccgtgttctttcatcataacctggaagaggacgtcacccggcaaccgtgggcgtcg
caggggttcaacaaaatcgtgctcgatccggcccgcgctggcgcgccgggcgtgatgtct
cacatcgtgaaactggcgcccgagcgcgtggtctacatatcctgtaacccgaccacgctg
gcgcgagacagcaaagtgctattggcggccggctatcggctggcgcgaatagcgatgctg
gatatgtttccacacaccgggcatcttgaatccatggcgttgtttctgcccggcgacggt
ggccggtaa
DBGET
integrated database retrieval system
