Lonsdalea populi: I6N93_04265
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Entry
I6N93_04265 CDS
T06954
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
lpop
Lonsdalea populi
Pathway
lpop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I6N93_04265 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpop03400
]
I6N93_04265 (recB)
Enzymes [BR:
lpop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I6N93_04265 (recB)
DNA repair and recombination proteins [BR:
lpop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I6N93_04265 (recB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QPQ25019
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All DBs
Position
950221..953787
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AA seq
1188 aa
AA seq
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MTTATPHSLNLFTLPLSGERLIEASAGTGKTYTLSALYLRLLLGLGGEHAYPRPLLVEEI
LVVTFTEAATEELRERIRKNIHTLYLACLGGEHCDALMQQLLAEIPQDWCHQAAEVLLRA
ERQMDEAAIYTIHGFCQRMLTTHAFESGILFEQRLLEDEQPLRRQACADFWRRYCYPLPL
EVVRVLSEQWQGPEALLQTLQPYLHGEMPTLREPPQQEETLLDRHQRIVAIIDAFKQTWR
EASDLEALIRGSGVDKRRYSSRNLPNWLRRVGEWADQPTQSYHLPKDLERFSQQELVERT
TKGEPPLHPVFSAVERLLQESLTLKDLVIWLALKEIKRTVREEKQRRAELGFDDLLGRLD
EALQQPDGGQLAEAIRTRYPVAMIDEFQDTDTQQYRIFHTIYADQPQCGWLMIGDPKQAI
YAFRGADIFTYMRARAEVRSHYTLDTNWRSAPGMVAAVNHLFQRVDAPFIFEQIPFLPVN
PAPPNQSYVFEMDGTKTPALRFWLTGQEGTGVGEYQQMMARQCAGQIRDWLTAGQSGQAW
LVKDKNKKRPVRAADITVLVRSRREAMLIRRALSRLNIPSVYLSNRDSVFTTVEAREMLW
ILQAVLAPEQERALRAAMATTMMGMDAPSLDALSRSEASWDALVDEFARYRQLWLKRGVL
PMLRALMMHRRLAEDLLASADGERRLTDMMHIGELLQEASASLDSEHALVRWLAQQIAQP
NPQAENQQLRLESDRHLVQIGTIHKSKGLEYPLVWLPFIGNFRSQQEGIYHDRQNFRAML
DLQNGEESQLLAEEERLAEDLRLLYVALTRAVYHCAVGVAPLFQGTRKKEGESDMHHSAL
GYLLQRGQAATAQALIAELEGMVGEDIALSMATEQDEQPWQPESALPPLLEARRTTRRLR
DGWRVTSYSGLQQHGSDTIQALLPHFDIDSMGETAEEEAAERSPHSFPRGAAPGTFLHSL
FETLDFTQPIDDEWLLERLRRYGIDDAWLPVLKLWMENVLSLPLNGDGIRLAELDNGHKQ
AELQFYLPIQRMLTADALDRLTRHHDPLSALCPALSFQQVKGMLKGFIDLIFVWQGRYYL
LDYKSNWLGHDASAYTQDAMMRAMAEHRYDLQYQLYTLALHRYLRHRLPDYGYEQHFGGV
FYLFLRGVSAEHPGNGIYFSRPSRAFIDDMDGLFCGEALTEGTHVEHD
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgcgactccgcactctcttaatttattcacgctgccgctgtctggcgagcgg
ttgattgaagcgtcggcgggaacgggtaaaacatacaccctgtccgcgctttatctacgt
ttgctgcttgggctaggcggtgaacacgcctatccgcgtcctttgctcgtcgaagagatt
ctggtggtcacctttacggaagcggcgacggaagaactgcgcgagcgtatccgcaaaaac
atccatacgctctatctcgcctgtctaggcggggagcactgcgatgcgctcatgcagcaa
ctgctggccgagatcccgcaggactggtgtcaccaggcggccgaagtgctactgcgcgcc
gaacggcagatggatgaagcggccatctataccattcatggcttttgccagcggatgctg
acaacccacgccttcgagtccggcatcctgtttgaacagcgtctgctagaagatgagcag
ccgttgcgccgtcaggcctgcgccgacttctggcgtcgctactgctatccgcttcccctg
gaagtagtgagggtgttgagcgaacaatggcaaggtccagaagccttgttgcagacgctg
cagccgtatttgcacggcgaaatgccgacgctgcgcgaaccgccacagcaggaagaaacc
ctgctggatcgccatcagcgtatcgtagcgatcattgacgcttttaaacagacgtggcgt
gaggcgtccgatctggaggcattgatccgcggttcgggcgtagataaacgacgctacagt
agtcgcaatctgcccaattggctgcgcagggtgggagagtgggccgatcagccgacgcag
agttaccatctgcctaaagatctggaacgctttagtcagcaggagctggttgaacgaacg
accaagggcgaacccccgctgcacccggtattcagcgcggtggaacggttgctgcaagaa
tctttgacgctcaaggatctggtcatctggctggcgctcaaagagatcaagcgcacggtg
cgggaagagaagcagcggcgggcggagctgggcttcgacgatctgttggggcgtctggat
gaagcattgcagcagccggacggcggccaattggccgaggcgatccgcacgcgttatccg
gtggcgatgatcgatgagttccaggatacggatacccagcagtatcgtattttccacacg
atctatgctgaccagccgcagtgcggctggttaatgatcggcgacccgaaacaggcgatt
tacgcatttcgcggggcggatatcttcacctacatgcgcgcgcgcgcggaggtgcggtcg
cactatacgctcgacaccaactggcgttccgcgccgggtatggtggccgcggtgaatcat
ctgtttcagcgcgtcgatgctccctttatcttcgaacagatcccgttcctgcccgtcaat
ccggctccgccaaaccagtcttatgtcttcgaaatggacggtacaaaaacgccggcgctt
cggttctggctgactggacaagaagggaccggggtcggtgaatatcagcagatgatggcc
cgtcaatgtgcgggacagatccgcgactggctgaccgccggacagtcggggcaggcatgg
ctggtcaaagataagaacaagaagaggccggtgcgggcggcggatattaccgtactggtg
cgcagccgccgcgaggcgatgctgatccgccgggcgttgagccgcctgaatatcccatcc
gtctacctgtccaaccgcgacagcgtgttcaccaccgtggaggcacgggagatgctatgg
atcctgcaggcggtgctggcgccggaacaggagcgcgcgctgcgtgcggcgatggcaacc
accatgatgggaatggatgcgccttcgttagatgcgctaagccgcagcgaagcgagttgg
gacgccctggtggacgaatttgcccgctaccggcagctctggcttaaacgcggcgttttg
cccatgttgagagcgttgatgatgcaccgtcggctggcggaggatctgctggcgagtgcc
gatggcgaacgccgtctgacagacatgatgcatatcggcgaactgttgcaggaggcctcg
gcgtcgttggacagcgaacacgcgctggtgcgctggctggcccagcagatcgcccagcct
aatccgcaggcagagaatcagcagctgcggctggaaagcgaccgccatctggtgcagata
gggaccattcataaatccaagggcctggaatatccgctggtctggctgcccttcatcggc
aactttcgctctcagcaagagggcatttaccacgacaggcagaacttccgggccatgctg
gatctgcaaaacggcgaagagagtcagctactggcagaagaggagcgtctggcggaagat
ttacggttgttgtacgtggctttgacccgagctgtttatcactgcgcggttggggttgcg
ccgctgtttcagggaacccgcaagaaagagggcgaaagcgatatgcaccacagcgcgttg
ggctatctattacagcgcggtcaggccgctaccgcccaggcgttaatcgccgagctggaa
ggcatggtgggagaggatatcgcgctaagcatggcgaccgaacaggacgaacagccgtgg
cagcctgagtcggcgctgccgccattgctcgaggcgcggcggactacccggcggctgcgc
gacggctggcgggtgaccagctattcaggattgcagcagcacggttccgataccattcag
gcgttgttgccccattttgatatcgactcgatgggcgaaacggcggaagaggaagcggcg
gagcgttcgccgcactcatttccgcgcggtgcagcgccggggacgtttttgcacagcctg
tttgaaacgctggattttacccaaccgatcgacgacgagtggctgctggaacggctgcgg
cgctatggcattgatgatgcgtggctgccggtgctgaagctctggatggagaacgtcctg
agtctgccgctcaacggtgacggtattcggctcgccgaactggataacggacataaacag
gccgagctgcagttctacctgccgatccagcggatgctcaccgctgacgcgctggaccgt
ctgactagacatcatgatccgctctccgcgctctgcccggcgttatcgtttcagcaggtc
aaaggcatgctgaagggatttatcgacctgatatttgtctggcagggccgctactacttg
ctggattacaaatccaactggctggggcatgacgccagcgcctatacgcaggacgccatg
atgcgggcgatggcggaacatcgctacgacctgcagtatcaactctacacgctggcgctg
caccgttatctgcggcatcgactgccggactacggctatgaacagcatttcggcggcgtt
ttttatctgtttctgcgcggcgtcagcgccgagcatcccggcaacgggatctacttctcg
cgtccttcccgggcgtttatcgacgatatggatggtttgttttgcggggaagcgttaacg
gagggtacgcatgtcgagcatgattga
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